Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB895_RS10440 Genome accession   NZ_CP021342
Coordinates   2185195..2185605 (+) Length   136 a.a.
NCBI ID   WP_001200146.1    Uniprot ID   A0AAQ0VHX0
Organism   Acinetobacter baumannii strain B8342     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2180195..2190605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB895_RS10425 (AB895_2116) - 2181184..2183490 (+) 2307 WP_004738178.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AB895_RS10430 (AB895_2117) - 2183535..2184308 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  AB895_RS10435 (AB895_2118) mazG 2184420..2185226 (+) 807 WP_004738180.1 nucleoside triphosphate pyrophosphohydrolase -
  AB895_RS10440 (AB895_2119) comEA 2185195..2185605 (+) 411 WP_001200146.1 helix-hairpin-helix domain-containing protein Machinery gene
  AB895_RS10445 (AB895_2120) pcnB 2185730..2187193 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  AB895_RS10450 (AB895_2121) folK 2187190..2187672 (+) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AB895_RS10455 (AB895_2122) panB 2187718..2188527 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AB895_RS10460 (AB895_2123) panC 2188531..2189379 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  AB895_RS10465 (AB895_2124) rapZ 2189402..2190253 (+) 852 WP_000821671.1 RNase adapter RapZ -
  AB895_RS10470 (AB895_2125) - 2190250..2190519 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15715.03 Da        Isoelectric Point: 10.4475

>NTDB_id=230064 AB895_RS10440 WP_001200146.1 2185195..2185605(+) (comEA) [Acinetobacter baumannii strain B8342]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=230064 AB895_RS10440 WP_001200146.1 2185195..2185605(+) (comEA) [Acinetobacter baumannii strain B8342]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412

Multiple sequence alignment