Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HH_RS05935 Genome accession   NC_004917
Coordinates   1193930..1194721 (+) Length   263 a.a.
NCBI ID   WP_011116067.1    Uniprot ID   Q7VGU3
Organism   Helicobacter hepaticus ATCC 51449     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1188930..1199721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH_RS05910 (HH1221) - 1189079..1190296 (+) 1218 WP_226989513.1 argininosuccinate synthase -
  HH_RS05915 (HH1222) - 1190300..1191814 (+) 1515 WP_148141021.1 SEL1-like repeat protein -
  HH_RS05920 (HH1223) minD 1191873..1192688 (+) 816 WP_011116063.1 septum site-determining protein MinD -
  HH_RS05925 (HH1224) minE 1192685..1192921 (+) 237 WP_011116064.1 cell division topological specificity factor MinE -
  HH_RS05930 (HH1226) - 1192922..1193920 (+) 999 WP_226989478.1 divergent polysaccharide deacetylase family protein -
  HH_RS05935 (HH1227) dprA 1193930..1194721 (+) 792 WP_011116067.1 DNA-processing protein DprA Machinery gene
  HH_RS05940 (HH1228) - 1194781..1195122 (+) 342 WP_011116068.1 hypothetical protein -
  HH_RS05945 (HH1229) dprB 1195122..1195538 (+) 417 WP_011116069.1 Holliday junction resolvase RuvX Machinery gene
  HH_RS05950 (HH1230) - 1195682..1196137 (+) 456 WP_050720610.1 hypothetical protein -
  HH_RS05955 (HH1231) - 1196390..1197562 (+) 1173 WP_011116071.1 DUF4136 domain-containing protein -
  HH_RS05960 (HH1232) ybeY 1197567..1198058 (-) 492 WP_011116072.1 rRNA maturation RNase YbeY -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29418.04 Da        Isoelectric Point: 6.6412

>NTDB_id=23002 HH_RS05935 WP_011116067.1 1193930..1194721(+) (dprA) [Helicobacter hepaticus ATCC 51449]
MIADILSLRSLPKAFEILPNPPKKLFYCGKNEVISTLLDCEHKIAIVGTRKPNPYTKSFVATLASKIAQNNGVVISGGAL
GVDIIAHTHAYPRTIMFSPASLEILYPKSNAEMIQKMMKECLVLSEYEKEYMPHKYSFLERNRLVIALSDKVIIPQADKQ
SGSMQSARIALELGKPIFVLPHRIGESEGTNALLSTGEAQAIYDVNAFIESTFGTKIREDDEVLLFCANNPSFEEAYERF
GAKIYEYEFEGKIIRESSFVRVP

Nucleotide


Download         Length: 792 bp        

>NTDB_id=23002 HH_RS05935 WP_011116067.1 1193930..1194721(+) (dprA) [Helicobacter hepaticus ATCC 51449]
ATGATTGCTGATATTTTATCCCTTAGAAGTTTGCCAAAAGCCTTTGAAATACTGCCAAATCCACCAAAAAAGCTTTTTTA
TTGTGGAAAAAATGAGGTAATCTCCACTTTGCTTGATTGTGAGCATAAAATTGCTATTGTTGGTACACGTAAACCTAATC
CTTATACAAAATCCTTTGTCGCTACACTTGCGAGTAAAATCGCACAAAATAATGGTGTAGTCATAAGCGGTGGCGCTTTG
GGAGTAGATATTATCGCTCATACACACGCCTATCCACGCACGATTATGTTTTCTCCCGCGAGTTTAGAGATACTTTACCC
TAAGAGCAATGCGGAGATGATTCAAAAAATGATGAAAGAATGTCTTGTTTTAAGTGAGTATGAAAAGGAATATATGCCTC
ATAAGTATAGTTTTTTGGAGCGAAATCGTCTTGTAATTGCTTTAAGTGATAAGGTAATTATCCCTCAAGCTGACAAACAA
AGTGGTTCAATGCAAAGTGCACGTATTGCTTTAGAGCTGGGTAAGCCTATTTTTGTTTTGCCTCATCGTATAGGTGAGAG
TGAGGGCACAAATGCTTTACTTTCTACAGGAGAGGCACAGGCTATTTATGATGTGAATGCCTTTATAGAATCTACTTTTG
GCACAAAGATTCGCGAAGATGATGAGGTTTTGCTTTTTTGTGCAAATAACCCAAGTTTTGAGGAGGCTTATGAGCGTTTT
GGTGCGAAGATATATGAATATGAATTTGAGGGAAAAATTATAAGAGAATCTAGCTTCGTCCGCGTGCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7VGU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

53.668

98.479

0.529
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.099

84.411

0.414

Multiple sequence alignment