Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HH_RS05945 Genome accession   NC_004917
Coordinates   1195122..1195538 (+) Length   138 a.a.
NCBI ID   WP_011116069.1    Uniprot ID   -
Organism   Helicobacter hepaticus ATCC 51449     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1190122..1200538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH_RS05915 (HH1222) - 1190300..1191814 (+) 1515 WP_148141021.1 SEL1-like repeat protein -
  HH_RS05920 (HH1223) minD 1191873..1192688 (+) 816 WP_011116063.1 septum site-determining protein MinD -
  HH_RS05925 (HH1224) minE 1192685..1192921 (+) 237 WP_011116064.1 cell division topological specificity factor MinE -
  HH_RS05930 (HH1226) - 1192922..1193920 (+) 999 WP_226989478.1 divergent polysaccharide deacetylase family protein -
  HH_RS05935 (HH1227) dprA 1193930..1194721 (+) 792 WP_011116067.1 DNA-processing protein DprA Machinery gene
  HH_RS05940 (HH1228) - 1194781..1195122 (+) 342 WP_011116068.1 hypothetical protein -
  HH_RS05945 (HH1229) dprB 1195122..1195538 (+) 417 WP_011116069.1 Holliday junction resolvase RuvX Machinery gene
  HH_RS05950 (HH1230) - 1195682..1196137 (+) 456 WP_050720610.1 hypothetical protein -
  HH_RS05955 (HH1231) - 1196390..1197562 (+) 1173 WP_011116071.1 DUF4136 domain-containing protein -
  HH_RS05960 (HH1232) ybeY 1197567..1198058 (-) 492 WP_011116072.1 rRNA maturation RNase YbeY -
  HH_RS05965 (HH1233) speA 1198153..1200006 (+) 1854 WP_011116073.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15623.03 Da        Isoelectric Point: 8.5058

>NTDB_id=23003 HH_RS05945 WP_011116069.1 1195122..1195538(+) (dprB) [Helicobacter hepaticus ATCC 51449]
MNHCILACDVGLKRIGLATLKQEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGMPSGGEAEHSDTQKRISHFISL
LSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQKDGRIDSLSACEILQRYIQSQKS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=23003 HH_RS05945 WP_011116069.1 1195122..1195538(+) (dprB) [Helicobacter hepaticus ATCC 51449]
ATGAATCATTGCATTCTTGCGTGTGATGTGGGACTTAAGCGTATCGGCTTAGCCACACTCAAGCAAGAAATTATCCTCCC
TCTCCCTCCTATTATCCGTATTAATCGTAATCAAGCTGCAAAAGAGCTTGATAATGTTCTCAAAGAGCGCAACATACACA
TACTTGTCGTGGGAATGCCAAGCGGCGGGGAAGCAGAGCATAGTGATACGCAAAAGCGCATCTCTCATTTTATCTCCCTT
CTTAGTTTTGAGGGTGAGATTTGCTTTGTCAATGAGGACTATACAAGCTTTAATGCTTTGCAATCTCTCTCTTATATGAA
AAGGCAAAATCGTGCCAGAGCCCAAAAAGATGGGCGCATAGATTCTCTAAGTGCGTGTGAAATCTTGCAACGATATATAC
AATCGCAAAAATCCTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(4-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

54.615

94.203

0.514

Multiple sequence alignment