Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC77_RS12845 Genome accession   NZ_CP027030
Coordinates   2606931..2607656 (+) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus strain FORC_077     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2601931..2612656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC77_RS12830 (FORC77_2337) clpC 2602406..2604979 (-) 2574 WP_045596288.1 ATP-dependent chaperone ClpB Regulator
  FORC77_RS12835 (FORC77_2338) pgeF 2605097..2605813 (-) 717 WP_207308089.1 peptidoglycan editing factor PgeF -
  FORC77_RS12840 (FORC77_2339) rluD 2605817..2606794 (-) 978 WP_011149571.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC77_RS12845 (FORC77_2340) comL 2606931..2607656 (+) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  FORC77_RS12850 (FORC77_2341) raiA 2608009..2608332 (+) 324 WP_011078575.1 ribosome-associated translation inhibitor RaiA -
  FORC77_RS12855 (FORC77_2342) pheA 2608576..2609754 (+) 1179 WP_011078576.1 prephenate dehydratase -
  FORC77_RS12860 (FORC77_2343) yjjX 2609779..2610315 (+) 537 WP_043920911.1 inosine/xanthosine triphosphatase -
  FORC77_RS12865 (FORC77_2344) trpR 2610346..2610654 (-) 309 WP_011078578.1 trp operon repressor -
  FORC77_RS12870 (FORC77_2345) sltY 2610670..2612625 (-) 1956 WP_011078579.1 murein transglycosylase -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=229987 FORC77_RS12845 WP_011078574.1 2606931..2607656(+) (comL) [Vibrio vulnificus strain FORC_077]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=229987 FORC77_RS12845 WP_011078574.1 2606931..2607656(+) (comL) [Vibrio vulnificus strain FORC_077]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACCGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTCTGGCGACCATTTCGCGTTTTACGCGTTTAAATCCCACACACGAGAAAATGGACTGGGTGTT
GTACATGCGTGGTCTCACCCACATGGCACAAGATCGTAACTTCATGCACGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTCAAACAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTATCCAAACAGCCCATATGCGGAAGAT
TCTCAAAAACGCATGTTTGCTCTTAAAAACCGTTTAGCAGAATATGATCTAGCAACCGCCGATTACTATCTGCGTCGTGA
AGCTTGGATTGCAGCCATCAATCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGGAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACCGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39

Multiple sequence alignment