Detailed information NTG0229986

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: FORC77_RS12830
• Genome accession: NZ_CP027030
• Coordinates: 2602406..2604979 (-)
• Length: 857 a.a.
• NCBI ID: WP_045596288.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FORC_077
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2597406..2609979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC77_RS12830 (FORC77_2337)	clpC	2602406..2604979 (-)	2574	WP_045596288.1	ATP-dependent chaperone ClpB	Regulator
FORC77_RS12835 (FORC77_2338)	pgeF	2605097..2605813 (-)	717	WP_207308089.1	peptidoglycan editing factor PgeF	-
FORC77_RS12840 (FORC77_2339)	rluD	2605817..2606794 (-)	978	WP_011149571.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
FORC77_RS12845 (FORC77_2340)	comL	2606931..2607656 (+)	726	WP_011078574.1	outer membrane protein assembly factor BamD	Machinery gene
FORC77_RS12850 (FORC77_2341)	raiA	2608009..2608332 (+)	324	WP_011078575.1	ribosome-associated translation inhibitor RaiA	-
FORC77_RS12855 (FORC77_2342)	pheA	2608576..2609754 (+)	1179	WP_011078576.1	prephenate dehydratase	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96066.97 Da
• Isoelectric Point: 5.2933

>NTDB_id=229986 FORC77_RS12830 WP_045596288.1 2602406..2604979(-) (clpC) [Vibrio vulnificus strain FORC_077]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIKAALE
QARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLANRMEEHGYQLEVSDKAL
ELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQIVAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=229986 FORC77_RS12830 WP_045596288.1 2602406..2604979(-) (clpC) [Vibrio vulnificus strain FORC_077]
ATGCGTCTTGATCGATTTACCAGCAAATTTCAAATCGCTATCTCTGATGCACAATCATTGGCGTTAGGGCGCGATCATCA
ATACATTGAACCTGTTCACTTAATGGTGGCGCTGCTTGATCAAAACGGCAGCCCTATTCGTCCACTGCTGACCATCTTAA
ATGTGGATGTCACTCACCTACGTTCAAAACTCAGCGAAATGCTGGATCGTTTGCCCAAAGTGAGCGGTATTGGTGGTGAT
GTACAGCTCTCCTCAGCCATGGGCGCGATGTTTAACCTGTGCGATAAAATTGCACAAAAACGCCAAGATGCTTACATCTC
ATCTGAAATCTTTTTGCTCGCAGCAATCGAAGATAGAGGACCACTTGGTCAGCTCTTCAAAGAACTTGGCTTAACTGAAC
AGAAAGTGAGTCAAGCTATCGAGCAAATTCGCGGTGGTCAAAAAGTGAATGATCAAAATGCGGAAGAACTTCGCCAAGCG
TTAGAGAAATTTACCATTGATCTGACGGAACGTGCAGAGCAGGGCAAACTTGACCCTGTGATTGGACGTGACGATGAAAT
TCGTCGCACCATCCAAGTATTGCAGCGTCGAACCAAAAACAACCCCGTGATCATTGGTGAGCCAGGTGTTGGTAAAACCG
CCATTGTTGAAGGTTTAGCACAACGCATCATTAATAACGAGGTGCCTGAAGGTCTGCGTGGTCGCCGAGTGTTGTCACTC
GATATGGGGGCGTTGGTGGCTGGAGCGAAGTACCGTGGTGAATTTGAAGAGCGACTTAAATCGGTATTGAATGAGTTGTC
TAAAGAAGAAGGCAATATCATCCTTTTTATTGATGAACTGCATACCATGGTTGGCGCCGGTAAAGGAGAAGGGTCGATGG
ATGCGGGCAATATGCTCAAACCCGCATTGGCACGTGGTGAGTTACATTGTGTGGGCGCAACGACACTTGATGAGTATCGT
CAGTATATCGAGAAAGATCCGGCACTTGAGCGCCGCTTCCAAAAAGTGCTGGTTGATGAACCAACAGTGGAAGACACCAT
TGCAATTTTGCGTGGTTTAAAAGAACGCTATGAGCTGCATCATCATGTTGAAATTACCGATCCAGCGATCGTTGCTGCGG
CCAGTTTGTCGCATCGCTATGTTTCTGATCGTCAATTACCAGATAAAGCGATCGACCTCATCGACGAAGCCGCATCCAGT
ATTCGTATGCAGATCGATTCTAAACCCGAAGCTCTGGATAAGTTGGAGCGCAAAATCATCCAACTTAAGATAGAGCAACA
GGCGCTGAGTAATGAACACGATGAAGCGAGTGAAAAACGTCTGCGCTCACTTAACGAAGAGTTGAATGAGAAAGAGCGTG
AGTTTGCTGAGTTAGAGGAAATTTGGAACGCGGAAAAAGCCGCGCTGTCTGGCACTCAGCATATTAAAGCCGCGTTAGAG
CAAGCACGCATGGATATGGAGTTTGCAAGACGAGCGGGGGATCTTAGCCGCATGTCTGAGCTTCAATATGGCCGTATTCC
AGAGCTTGAGAAGCAACTTGACCTAGCAACGCAAGCAGAAATGCAGGAAATGACCTTGTTGAAAAACAAAGTCACCGATA
ATGAAATTGCGGAAGTGCTTTCTAAGCAAACGGGTATCCCCGTCTCCAAAATGCTTGAAGCAGAAAAAGAAAAACTGCTT
CGCATGGAAGAGGTGCTGCATAAACGTGTTATTGGGCAGAAAGAGGCGGTGGAAGTTGTTGCGAATGCGATACGTCGCAG
CCGGGCGGGCTTGTCCGATCCCAATAAACCGATTGGTTCGTTCTTATTCTTAGGTCCAACCGGTGTGGGGAAAACGGAAC
TGTGCAAAACGTTAGCGAATTTCATGTTCGACAGTGAAGATGCCATGGTGCGTATCGACATGTCTGAGTTTATGGAGAAA
CACTCAGTGGCACGCTTAGTCGGTGCACCTCCGGGCTATGTGGGTTATGAAGAAGGTGGATATTTAACGGAAGCGGTTCG
ACGTAAGCCTTATTCAGTGATTTTGCTCGATGAAGTGGAAAAGGCACACCCTGATGTGTTCAACATCCTGCTACAAGTCT
TGGATGATGGTCGATTGACGGATGGACAAGGTAGAACGGTGGATTTCCGCAATACCGTGGTCATCATGACATCAAACCTA
GGCTCCAGCCGCATCCAAGAAAACTTCGCTATGTTGGATTACCAAGGCATCAAAGAACAGGTGATGGAAGTAGTGACCAA
GCACTTTAGACCGGAGTTTTTGAACCGTGTTGATGAGACAGTGGTCTTCCACCCACTTGGTCAAGACCATATTAAGTCGA
TCGCAGCGATTCAACTTAACCGCTTGGCGAATCGCATGGAAGAGCATGGCTATCAGTTGGAAGTGTCTGATAAAGCGCTC
GAATTGATCGCACAAGTTGGTTTTGACCCGGTTTACGGAGCAAGACCATTGAAACGAGCGATTCAGCAAAGTATCGAAAA
CCCGCTGGCGAAATCTATTTTGGCAGGTTCAGTGCTACCGGATAAGAAAATACAGCTTATCGTCAACAACGACCAAATTG
TGGCACACCAATAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• AAA lid domain (AAA_lid_9) (342-444)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.828	100	0.474
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.54	100	0.415
clpE	Streptococcus mutans UA159	48.159	79.23	0.382
clpE	Streptococcus pneumoniae D39	48.154	78.996	0.38
clpE	Streptococcus pneumoniae Rx1	48.154	78.996	0.38
clpE	Streptococcus pneumoniae R6	48.154	78.996	0.38
clpC	Lactococcus lactis subsp. cremoris KW2	46.009	80.397	0.37