Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FORC77_RS10550 Genome accession   NZ_CP027030
Coordinates   2126254..2128284 (-) Length   676 a.a.
NCBI ID   WP_131069957.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2121254..2133284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC77_RS10525 (FORC77_1904) moaB 2121344..2121856 (-) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -
  FORC77_RS10530 (FORC77_1905) moaA 2121937..2122926 (-) 990 WP_013572112.1 GTP 3',8-cyclase MoaA -
  FORC77_RS10535 (FORC77_1906) - 2123242..2124132 (+) 891 WP_011080890.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  FORC77_RS10540 (FORC77_1907) luxU 2124233..2124580 (-) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  FORC77_RS10545 (FORC77_1908) luxO 2124580..2125980 (-) 1401 WP_011149911.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FORC77_RS10550 (FORC77_1909) uvrB 2126254..2128284 (-) 2031 WP_131069957.1 excinuclease ABC subunit UvrB Machinery gene
  FORC77_RS10565 (FORC77_1911) rsxA 2129166..2129744 (+) 579 WP_011080895.1 electron transport complex subunit RsxA -
  FORC77_RS10570 (FORC77_1912) rsxB 2129746..2130342 (+) 597 WP_011080896.1 electron transport complex subunit RsxB -
  FORC77_RS10575 (FORC77_1913) rsxC 2130355..2132763 (+) 2409 WP_131069959.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77021.78 Da        Isoelectric Point: 5.0408

>NTDB_id=229975 FORC77_RS10550 WP_131069957.1 2126254..2128284(-) (uvrB) [Vibrio vulnificus strain FORC_077]
MSKLYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLH
IRRGDVMDQRDILRRLAELQYSRNDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQSDLP
RFTIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPVLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADSITK
SMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDITKSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEIT
KLEAQMYKHAQNLEFELAAQKRDEIEKLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=229975 FORC77_RS10550 WP_131069957.1 2126254..2128284(-) (uvrB) [Vibrio vulnificus strain FORC_077]
ATGAGCAAACTTTACGATCTGGTTTCTGACTATGCGCCATCGGGAGATCAACCAACGGCGATCAAACAACTGACAGAAGG
GTTGGATGCTGGCTTGGCTCACCAAACCTTACTTGGGGTGACGGGATCCGGTAAAACATTTACTTTGGCGAATGTGATTG
CTCAAGCACAACGTCCTGCAATTCTGCTCGCGCCAAACAAAACTCTTGCCGCCCAACTTTACGGCGAGATGAAAGCGTTT
TTCCCCAATAACGCGGTCGAATATTTTGTTTCTTACTACGATTATTACCAACCTGAAGCCTATGTGCCAACCACCGACAC
CTTTATAGAGAAGGACTCATCGGTCAACGCTCATATTGAACAAATGCGTTTATCGGCCACCAAAGCGTTATTGGAGCGAA
AAGACGCTATTATCGTCGCCTCTGTTTCGGCTATTTATGGTTTGGGTGATCCCGAGGCCTACCTGCAAATGATGTTGCAT
ATACGCCGTGGTGATGTGATGGATCAACGCGACATACTGCGCCGTTTGGCTGAGCTGCAATATAGCCGTAACGATATTGC
TTTTGAACGAGGCCAATTTCGCGTGCGCGGAGAGGTGATCGACGTTTTTCCGGCTGAATCGGACCAAGATGCGGTGCGCA
TCGAGATGTTTGATGATGAGATCGACTGCATCAGTGTGTTTGATCCACTGACCGGAGTGGTCAAACAAAGCGATTTACCC
CGCTTTACTATTTACCCTAAGACTCACTACGTCACACCTCGAGAGCGTATTCTGCAGGCGATTGAAAACATCAAACAAGA
GCTGCGTGAGCGACAAACTTACTTGCGTGACAACAATAAATTGTTGGAAGAGCAACGTATTAGTCAGCGTACCCAATTCG
ATATTGAAATGATGAATGAGCTGGGATTCTGCTCTGGCATCGAAAACTACTCGCGTTACCTCAGCGGTCGAGCGGAAGGT
GAGCCGCCTCCAACGTTATTTGACTACTTACCACACGACGGTTTGTTGATCATTGATGAATCTCACGTGACAGTGCCACA
AATTGGCGCAATGTATAAAGGTGACCGCTCACGGAAAGAGACCTTGGTTGAATATGGTTTCCGTTTGCCTTCAGCATTGG
ACAATCGACCATTGAAATTTGAAGAGTTCGAAGCGCTTGCGCCACAAACTATTTTCGTTTCAGCCACTCCGGGTAATTAC
GAACTAGAGAAAAGTGCGGGCGAAATTGCTGACCAAGTGGTGCGTCCGACCGGATTGCTCGATCCTGTACTGGAAGTGCG
ACCAGTGGCGACTCAAGTGGATGATCTGCTTTCTGAGATCCGCATTCGCGCGGTGAAAGATGAACGCGTGTTAGTGACAA
CACTGACCAAACGTATGGCGGAAGATCTAACTGAATACTTGCATGAGCACGATGTGAAAGTGCGTTACCTACACTCTGAT
ATCGACACGGTTGAACGAGTGGAGATCATTCGTGACTTGAGGCTAGGGGAGTTCGATGTGTTGGTGGGGATTAACTTGTT
ACGCGAGGGTCTCGACATGCCTGAAGTGTCTTTGGTTGCGATTCTCGATGCTGATAAAGAAGGCTTTTTACGTTCAGAGC
GCTCATTGATTCAGACCATTGGCCGTGCAGCCCGTAACCTCCATGGTAAAGCGATCTTGTATGCAGACTCCATCACCAAA
TCGATGAAGAAAGCGATGGATGAAACTGAACGACGCCGTGAGAAACAGCAAGCGTACAATGAAAAGATGGGCATTCAGCC
TCAAGCCTTGAAGCGTAATATCAAAGATATTATGGAGCTGGGCGATATTACGAAATCCCGCAAGCAGAAAGTGAGCAAAA
CGGTGCCATTGTCGAAAGTGGCTGAACCATCGCTGTCCTATAATGTGTTGACACCACAGCAATTGGAAAAAGAAATCACA
AAACTGGAAGCGCAAATGTACAAACACGCTCAGAATTTGGAATTTGAGTTGGCCGCGCAGAAGCGTGATGAAATTGAAAA
GTTGCGTCAGCAGTTTATTGCTAACAGCTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-250)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

Type III restriction enzyme, res subunit (ResIII)

(16-138)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB/uvrC motif (UVR)

(636-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.297

97.485

0.549
  uvrB Streptococcus pneumoniae R6

56.297

97.485

0.549
  uvrB Streptococcus pneumoniae D39

56.297

97.485

0.549