Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   FORC77_RS04945 Genome accession   NZ_CP027030
Coordinates   1049533..1051686 (+) Length   717 a.a.
NCBI ID   WP_238834462.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_077     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1044533..1056686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC77_RS04920 (FORC77_0926) - 1044751..1045320 (-) 570 WP_011079965.1 hypothetical protein -
  FORC77_RS04925 (FORC77_0927) lolC 1045586..1046791 (+) 1206 WP_011150839.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  FORC77_RS04930 (FORC77_0928) lolD 1046784..1047467 (+) 684 WP_011079967.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  FORC77_RS04935 (FORC77_0929) lolE 1047479..1048723 (+) 1245 WP_060531132.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  FORC77_RS04940 (FORC77_0930) - 1048919..1049428 (-) 510 WP_131069711.1 DUF2062 domain-containing protein -
  FORC77_RS04945 (FORC77_0931) comEC 1049533..1051686 (+) 2154 WP_238834462.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FORC77_RS04950 (FORC77_0932) msbA 1051719..1053470 (+) 1752 WP_043877274.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  FORC77_RS04955 (FORC77_0933) lpxK 1053470..1054477 (+) 1008 WP_011150832.1 tetraacyldisaccharide 4'-kinase -
  FORC77_RS04960 (FORC77_0934) - 1054458..1054637 (+) 180 WP_011079973.1 Trm112 family protein -
  FORC77_RS04965 (FORC77_0935) kdsB 1054637..1055392 (+) 756 WP_011150831.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FORC77_RS04970 (FORC77_0936) - 1055564..1056352 (+) 789 WP_011079975.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80407.85 Da        Isoelectric Point: 8.7095

>NTDB_id=229955 FORC77_RS04945 WP_238834462.1 1049533..1051686(+) (comEC) [Vibrio vulnificus strain FORC_077]
MLIVVAIFIIIVRKTCRYLLGVTIALLIAISAGNLMQWQVKTLFQAGENITINGAVDSPFKQISHGYEGVVSITAINNSH
LVWTLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAVSQGIVGRATIDDSRSWRLVSVKGGRQALIEKA
QQLLVRSDHTGYLLGLSFGLRDDITDEQWQQLKQSGLIHLLSISGLHIGMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSL
SWSYAWLAGFTLPTQRAIVFVTLVALFSFTSGQVGRWTVLLLALAFCLAMSPFSALSTSLWLSFLAVSCVFLVVDLRESS
SSWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFSLVVVPVIFVALVLTALDMMPVASMLWQLADLS
LWPLTYAMPYAHLGWWGLSSFQVVLVALCALAVMLRHFIRWQLSVVLIILLSISSLSVHSLSRTRIDVLDVGHGLAVLIE
KDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDHAGGLPYLQQNMRPQWVRSSHYLSDFPCVKGND
FEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDALAEWILIRDPEQLNSDVVLVPHHGSQTSSIEPF
VNAVQAGVAIASLAKGNQWGMPQPKVVETYRRHRTQWFDTGELGQITLYVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=229955 FORC77_RS04945 WP_238834462.1 1049533..1051686(+) (comEC) [Vibrio vulnificus strain FORC_077]
ATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGCTGGGGGTGACCATCGCACTTTT
GATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAGAATATTACCATAAATG
GCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATCACAGCAATAAATAATAGTCAT
TTAGTGTGGACCCTGCGACCTAAAGTGCGTTTGATCTCACCCATTCCTCTTGGGCAGGGGGATCAAATCGTAGCGCATGT
TACTCTAAAACGAGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTCAGCCAAGGCATCGTTG
GACGGGCAACTATTGATGATTCTCGCTCTTGGCGTTTGGTCTCCGTGAAGGGAGGGCGACAAGCGCTGATCGAAAAAGCT
CAGCAGCTACTGGTTCGTAGCGATCATACCGGTTATTTACTTGGCTTAAGCTTTGGTCTTCGCGACGACATTACCGACGA
GCAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTACTTTCTATCTCAGGGCTGCACATTGGTATGGCTTTTGGTA
TCGGTTACTGGCTCGGGCATTGGTTGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCGTTGGCTATTGGACTTAGTCTC
AGTTGGAGTTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTTTGTCACGTTAGTCGCCTTGTT
CTCGTTTACGTCGGGGCAAGTCGGTCGTTGGACAGTCTTGCTGTTGGCACTGGCCTTTTGTCTTGCGATGTCGCCATTTT
CTGCCCTTTCTACCAGTCTCTGGCTCTCGTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGATCTCCGTGAGTCGTCT
TCATCTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTGCTGCTTTATCTCGCACCTGTGACTGCTTA
CTTCTTTTCCGGTTTGAGTCTGGCCGCCTGGCTGTATAACTTCCTGTTTATTCCCTGGTTTAGTTTGGTGGTGGTGCCTG
TTATCTTTGTTGCACTCGTGCTGACTGCGCTGGATATGATGCCTGTAGCCAGTATGCTATGGCAGTTAGCGGATTTAAGT
TTATGGCCATTAACTTACGCTATGCCTTACGCCCACTTAGGTTGGTGGGGGCTGTCTTCTTTTCAGGTGGTGTTGGTCGC
GTTGTGCGCGCTCGCTGTGATGCTGAGACATTTTATTCGCTGGCAACTTTCTGTCGTTCTGATCATTTTGCTCAGCATTT
CTTCACTATCGGTTCACTCTCTTTCTCGCACCCGAATTGACGTTTTAGATGTTGGCCATGGGCTCGCCGTATTGATTGAG
AAAGACGGTAAAACGCTGCTTTATGACACTGGAAAGTCTTGGCATGGTGGAAGTATTGCGCAGCAAGTGATTGAGCCTAT
TTTATTGAGTCGGGGTAGTAGAAGCCTTGATGGGGTGATCATCAGCCATCAAGATGACGATCATGCAGGCGGCTTGCCCT
ATTTGCAGCAAAACATGCGCCCACAATGGGTAAGGAGTAGTCATTACTTGAGTGATTTTCCGTGTGTTAAAGGTAATGAC
TTTGAGTGGCAAGGGCTTAAAATGACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACAATCCCCACTCCTGTGT
GATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGTGATATTGACGCTTTGGCTGAGTGGATTCTGA
TTCGTGATCCTGAACAGCTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTCGTCGATTGAGCCTTTT
GTGAACGCCGTCCAGGCAGGTGTGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGCCACAACCGAAAGTGGT
CGAGACTTATCGACGACATCGCACGCAGTGGTTTGATACTGGTGAGCTGGGTCAGATAACGTTGTATGTGGAACAGAGAA
ACTGGCGAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCAAGTAGAATAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(176-436)

Metallo-beta-lactamase superfamily (Lactamase_B)

(471-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

45.152

100

0.455
  comEC Vibrio parahaemolyticus RIMD 2210633

45.726

97.908

0.448
  comEC Vibrio cholerae strain A1552

42.659

100

0.43

Multiple sequence alignment