Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   C5L38_RS25625 Genome accession   NZ_CP027022
Coordinates   5635490..5637619 (+) Length   709 a.a.
NCBI ID   WP_062756606.1    Uniprot ID   A0AAV4KIZ2
Organism   Streptomyces sp. WAC00288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5630490..5642619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5L38_RS25605 (C5L38_25610) - 5631746..5632102 (+) 357 WP_062756603.1 cupin domain-containing protein -
  C5L38_RS25610 (C5L38_25615) - 5632247..5633551 (-) 1305 WP_062756604.1 MFS transporter -
  C5L38_RS25615 (C5L38_25620) - 5633702..5634292 (-) 591 WP_079131349.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  C5L38_RS25620 (C5L38_25625) - 5634522..5635418 (+) 897 WP_062756605.1 MHYT domain-containing protein -
  C5L38_RS25625 (C5L38_25630) uvrB 5635490..5637619 (+) 2130 WP_062756606.1 excinuclease ABC subunit UvrB Machinery gene
  C5L38_RS25630 (C5L38_25635) - 5637760..5638338 (+) 579 WP_030205232.1 TerD family protein -
  C5L38_RS25635 (C5L38_25640) - 5638503..5640629 (+) 2127 WP_062756607.1 TerD family protein -
  C5L38_RS25640 (C5L38_25645) - 5640862..5641869 (+) 1008 WP_062756608.1 TerC/Alx family metal homeostasis membrane protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79968.49 Da        Isoelectric Point: 4.7774

>NTDB_id=229909 C5L38_RS25625 WP_062756606.1 5635490..5637619(+) (uvrB) [Streptomyces sp. WAC00288]
MRPVSKIERTVAPFEVVSSYQPSGDQPTAIADLERRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGEEIDRDQLLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDEHLYVFPASHYVAGPERMERAVNDIERELEGRLAELDKQGKHLESQRLRMRTTYDIEMMRQIGSCSGIENYSMH
FDGREPGSAPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGTYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRLRAERDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADRITPAMEQAIDETNRRREKQVAYNTEHGIDPQPLRKKINDIVATIAREEIDTEELLGTGYRQEKEGKGAKAPVPALAA
HAPKGRGKAGSTVELGDRPATELASIIEDMTNRMRAAAADLQFEVAARLRDEVGELKKELRQMKEAGLA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=229909 C5L38_RS25625 WP_062756606.1 5635490..5637619(+) (uvrB) [Streptomyces sp. WAC00288]
ATGCGGCCCGTTTCCAAGATCGAACGTACGGTGGCGCCCTTCGAGGTCGTCAGCTCCTACCAGCCCAGCGGTGACCAGCC
GACGGCCATCGCCGACCTCGAGCGGCGGATCCGCGCGGGCGAGAAGGACGTCGTGCTCCTCGGCGCCACCGGCACCGGCA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTCCTGCCCAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCCATCAACGAGGAGGTGGAGCGGCTCCGCCACT
CCGCGACGAACTCCCTGCTCACCCGCCGGGACGTGGTCGTCGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACGCCC
CAGGAGTACGTGGACCGGATGGTCCCGCTCAAGGTCGGCGAGGAGATCGACCGCGACCAGCTGCTCCGCCGCTTCGTCGA
CATCCAGTACACCCGGAACGACCTGGCGTTCACCCGCGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TGTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTCCACCCGCTCACCGGC
GAGGTCATCAGCGAGGACGAGCACCTGTACGTCTTCCCGGCCAGCCACTACGTGGCGGGACCCGAGCGCATGGAGCGCGC
GGTCAACGACATCGAGCGCGAGCTGGAGGGCCGCCTCGCCGAGCTGGACAAGCAGGGCAAGCACCTGGAGTCCCAGCGGC
TGCGCATGCGGACCACGTACGACATCGAGATGATGCGCCAGATCGGCTCCTGCTCCGGCATCGAGAACTACTCGATGCAC
TTCGACGGACGCGAGCCCGGCTCCGCGCCCAACACGCTCCTGGACTACTTCCCCGAGGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTCCCCTCCGCCCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGGATCGGCCAGACCGTCTACCTC
TCCGCGACCCCCGGGACGTACGAGCTCTCGCGCGGCGACGGCTTCGTCGAGCAGATCATCCGCCCCACCGGCCTCGTGGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGTCAGATCGACGACCTGGTCCACGAGATCCGGCTGCGCGCCGAGCGGGACG
AGCGGGTCCTCGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTGGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGCGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTCCTCCGGGAGGGCCTCGACCTTCCGGAGGTGTCCCTGGTCGCCATCCTGGACGCCGACAAGCAGG
GCTTCCTGCGCTCCGGGACCTCCCTCATCCAGACGATCGGCCGTGCCGCGCGGAACGTCTCGGGCCAGGTCCACATGTAC
GCGGACCGGATCACCCCGGCGATGGAGCAGGCCATCGACGAGACCAACCGGCGCCGCGAGAAGCAGGTCGCGTACAACAC
GGAACACGGCATCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTGGCGACCATCGCGCGCGAGGAGATCGACA
CCGAGGAGCTGCTCGGCACCGGCTACCGGCAGGAGAAGGAGGGCAAGGGAGCCAAGGCCCCCGTCCCCGCGCTCGCGGCG
CACGCCCCCAAGGGCCGCGGCAAGGCCGGCTCCACGGTCGAGCTCGGCGACCGTCCCGCCACCGAACTGGCCTCGATCAT
CGAGGACATGACGAACCGGATGCGCGCCGCCGCCGCCGACCTCCAGTTCGAGGTGGCCGCCCGGCTGCGCGACGAGGTGG
GAGAGCTGAAGAAGGAGTTGCGCCAGATGAAGGAGGCGGGCCTCGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(666-699)

UvrB interaction domain (UvrB_inter)

(169-257)

Type III restriction enzyme, res subunit (ResIII)

(24-134)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(449-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAV4KIZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.831

97.038

0.551
  uvrB Streptococcus pneumoniae R6

56.831

97.038

0.551
  uvrB Streptococcus pneumoniae D39

56.831

97.038

0.551

Multiple sequence alignment