Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   C5L38_RS23255 Genome accession   NZ_CP027022
Coordinates   5120135..5121199 (+) Length   354 a.a.
NCBI ID   WP_234363812.1    Uniprot ID   -
Organism   Streptomyces sp. WAC00288     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5115135..5126199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5L38_RS23240 (C5L38_23245) - 5115428..5116750 (+) 1323 WP_062755894.1 deoxyguanosinetriphosphate triphosphohydrolase -
  C5L38_RS23245 (C5L38_23250) - 5116879..5118138 (+) 1260 WP_062755896.1 FAD-dependent oxidoreductase -
  C5L38_RS23250 (C5L38_23255) dnaG 5118168..5120060 (+) 1893 WP_062755898.1 DNA primase -
  C5L38_RS23255 (C5L38_23260) rpoS 5120135..5121199 (+) 1065 WP_234363812.1 RNA polymerase sigma factor Regulator
  C5L38_RS23265 (C5L38_23270) rcrQ 5121424..5123352 (-) 1929 WP_062755903.1 ABC transporter ATP-binding protein Regulator
  C5L38_RS23270 (C5L38_23275) rcrP 5123352..5125085 (-) 1734 WP_062755905.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 40112.56 Da        Isoelectric Point: 5.2717

>NTDB_id=229903 C5L38_RS23255 WP_234363812.1 5120135..5121199(+) (rpoS) [Streptomyces sp. WAC00288]
MTVPFRSSWRSPAVQTQTVPQDRTESDENVEDAEEPAVVPAQRRRPDPGGNGPSSDLFRQYLREIGRIPLLTAEEEVELA
RRVEAGLFAEEKLANTPDLDTRLAGDLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK
FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAQLDLPPERIGEVL
RLAQEPVSLHTPVGEEEDVALGDLIEDGDATSPVESAAFLLLRRHLEDVLSTLGERERKVVQLRYGLDDGRPRTLEEIGQ
LFGVTRERIRQIESKTLGKLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=229903 C5L38_RS23255 WP_234363812.1 5120135..5121199(+) (rpoS) [Streptomyces sp. WAC00288]
ATGACGGTGCCGTTCCGCTCCTCCTGGAGGTCGCCCGCCGTGCAGACCCAGACCGTGCCGCAGGACCGGACAGAGTCCGA
CGAGAACGTGGAAGACGCGGAGGAGCCCGCGGTCGTCCCGGCCCAGCGCCGCCGCCCGGACCCCGGCGGCAACGGCCCCT
CCTCCGACCTCTTCCGCCAGTACCTGCGCGAGATCGGCCGCATCCCGCTCCTCACCGCCGAGGAGGAGGTCGAACTGGCC
CGCCGCGTCGAGGCCGGCCTCTTCGCCGAGGAGAAGCTGGCCAACACCCCGGACCTGGACACCCGCCTCGCGGGCGACCT
GGACAGGCTCGTCGTCCTCGGCCGGATCGCGAAGCGCCGGCTCATCGAGGCCAACCTGCGCCTCGTCGTCTCCGTCGCCA
AGCGGTACGTGGGCCGGGGCCTGACCATGCTCGACCTCGTCCAGGAGGGCAACCTCGGCCTCATCCGGGCCGTCGAGAAG
TTCGACTACGCGCGCGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCGCCAGGCCATGTCCCGCGCCCTCGCCGA
CCAGGCCCGCACCATCCGCGTCCCCGTCCACGTCGTGGAACTCATCAACCGGGTCGTCCGCGTCCAGCGCCGCATGCTCC
AGGAACGCGGCTACGAACCCACCCCCGAAGAGGTCGCCGCCCAGCTCGACCTGCCCCCCGAGCGCATCGGGGAGGTGCTC
CGCCTCGCCCAGGAGCCGGTCTCCCTGCACACCCCCGTCGGCGAGGAGGAGGACGTCGCCCTCGGCGACCTCATCGAGGA
CGGCGACGCCACCTCCCCGGTCGAGTCCGCCGCCTTCCTCCTCCTGCGCCGCCACCTGGAGGACGTCCTCTCCACCCTGG
GCGAACGCGAACGCAAGGTCGTCCAGCTCCGCTACGGCCTGGACGACGGCCGCCCCCGCACCCTGGAGGAGATAGGGCAG
CTCTTCGGCGTCACCCGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCGGCAAACTCCGCGACCACGCCTACGCGGA
CCAGCTGCGCGGCTACCTCGACTAG

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(121-190)

Sigma-70, region 4 (Sigma70_r4)

(289-341)

Sigma-70 region 3 (Sigma70_r3)

(200-276)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

42.812

90.395

0.387

Multiple sequence alignment