Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C5L38_RS23265 Genome accession   NZ_CP027022
Coordinates   5121424..5123352 (-) Length   642 a.a.
NCBI ID   WP_062755903.1    Uniprot ID   A0ABX6BCM8
Organism   Streptomyces sp. WAC00288     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5116424..5128352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5L38_RS23245 (C5L38_23250) - 5116879..5118138 (+) 1260 WP_062755896.1 FAD-dependent oxidoreductase -
  C5L38_RS23250 (C5L38_23255) dnaG 5118168..5120060 (+) 1893 WP_062755898.1 DNA primase -
  C5L38_RS23255 (C5L38_23260) rpoS 5120135..5121199 (+) 1065 WP_234363812.1 RNA polymerase sigma factor Regulator
  C5L38_RS23265 (C5L38_23270) rcrQ 5121424..5123352 (-) 1929 WP_062755903.1 ABC transporter ATP-binding protein Regulator
  C5L38_RS23270 (C5L38_23275) rcrP 5123352..5125085 (-) 1734 WP_062755905.1 ABC transporter ATP-binding protein Regulator
  C5L38_RS23275 (C5L38_23280) - 5125303..5126742 (-) 1440 WP_062755907.1 FGGY family carbohydrate kinase -
  C5L38_RS23280 (C5L38_23285) - 5126770..5127081 (-) 312 WP_062757103.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69237.48 Da        Isoelectric Point: 5.3084

>NTDB_id=229904 C5L38_RS23265 WP_062755903.1 5121424..5123352(-) (rcrQ) [Streptomyces sp. WAC00288]
MAGPGGRMMAGGGPDQRSMDFKGSGKRLLRQLAPERGALWVMLIACVLSVAASVIGPKILGRATDLIFAGVVGRQTEPGA
TKAETLAGLRADGQDGMADMLSGVDFTPGQGIDFSAVGRVLLLVLAVYVAAGLLMLVATRLSITVINRTVYRMREDVQTK
LARLPLSYFDKAKRGEVLSRATNDIDNVSQTLQQSMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVVVAARIGK
RSQPHFVQQWRSTGTLNAHIEEMYTGHALVKVFGRQEESAKDFREQNEALYEAGFKAQFNSGVMQPVMFFISNINYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEPDAPTDEKPLESRGRVALE
HVSFRYEEDKPLIEDLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVARMSRERLRSGIGMVLQDT
WLFGGTIADNIAYGATRPVTRAEIEEAARAAHADRFVRTLPDGYDTVLDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEDLLSSGGAYSRLYAAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=229904 C5L38_RS23265 WP_062755903.1 5121424..5123352(-) (rcrQ) [Streptomyces sp. WAC00288]
ATGGCCGGTCCTGGCGGACGCATGATGGCCGGTGGCGGCCCCGACCAGCGGTCGATGGACTTCAAGGGCTCGGGGAAGCG
GCTGCTGCGGCAGCTGGCGCCCGAGCGCGGCGCGCTCTGGGTGATGCTGATCGCCTGCGTGCTCTCGGTGGCGGCCTCCG
TGATCGGGCCGAAGATCCTGGGCCGGGCGACGGACCTGATCTTCGCCGGGGTGGTCGGGCGGCAGACGGAACCGGGCGCC
ACGAAGGCGGAGACCCTGGCGGGGCTGCGCGCCGACGGGCAGGACGGCATGGCGGACATGCTGTCCGGCGTCGACTTCAC
CCCGGGGCAGGGGATCGACTTCTCCGCCGTGGGCCGGGTGCTGCTCCTGGTCCTCGCGGTGTACGTGGCGGCGGGCCTGC
TGATGCTGGTCGCCACCCGCCTGTCGATCACGGTGATCAACCGGACGGTCTACCGGATGCGGGAGGACGTCCAGACGAAG
CTGGCGCGGCTGCCGCTGTCGTACTTCGACAAGGCCAAGCGCGGCGAGGTGCTGTCCAGGGCGACCAACGACATCGACAA
CGTCTCGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACGATCGTCGGCGTGCTCGCGATGATGT
TCTGGATCTCGCCGCTGCTCGCCCTGGTGGCCCTGGTGACGGTCCCGGTGTCGGTGGTCGTGGCGGCGCGGATCGGCAAG
CGCTCGCAGCCGCACTTCGTACAGCAGTGGAGGTCCACGGGCACGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCCCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAAGGACTTCCGCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACTCCGGCGTGATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTCCTGGTGGCC
GTGGTCGGCGGGCTGCGGGTGGCGAGCGGCACGCTCTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCCTCGGCGGAGCGGGTCTTCGAAC
TGCTCGACGCGGAGGAGCAGGAGCCGGACGCCCCGACGGACGAGAAGCCTCTCGAATCGCGCGGCCGGGTCGCCCTGGAG
CACGTCTCCTTCCGGTACGAGGAGGACAAGCCGCTCATCGAGGACCTGTCGCTGACGGTGGAGCCGGGGCAGACGGTCGC
GATCGTCGGTCCGACGGGCGCGGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGGCGGA
TCACCCTGGACGGGGTGGACGTCGCGAGGATGTCGCGCGAGCGGCTGCGGAGCGGGATCGGGATGGTCCTCCAGGACACC
TGGCTCTTCGGCGGGACGATCGCGGACAACATCGCGTACGGCGCGACGCGCCCGGTGACCCGGGCGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCGTCCGGACCCTGCCCGACGGGTACGACACGGTCCTGGACGACGAGGGCTCGG
GGGTGAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGCGCGTTCCTGTCCGACCCGGTGATCCTCGTCCTGGACGAG
GCCACCAGCTCGGTCGACACCCGCACCGAGGTCCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGCACCTCGTT
CGTGATCGCCCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGG
GCACCCACGAGGATCTGCTGTCCTCGGGCGGCGCCTACTCCCGCCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCGGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.968

96.262

0.385

Multiple sequence alignment