Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C5L38_RS23270 Genome accession   NZ_CP027022
Coordinates   5123352..5125085 (-) Length   577 a.a.
NCBI ID   WP_062755905.1    Uniprot ID   A0AAV4KP39
Organism   Streptomyces sp. WAC00288     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5118352..5130085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5L38_RS23255 (C5L38_23260) rpoS 5120135..5121199 (+) 1065 WP_234363812.1 RNA polymerase sigma factor Regulator
  C5L38_RS23265 (C5L38_23270) rcrQ 5121424..5123352 (-) 1929 WP_062755903.1 ABC transporter ATP-binding protein Regulator
  C5L38_RS23270 (C5L38_23275) rcrP 5123352..5125085 (-) 1734 WP_062755905.1 ABC transporter ATP-binding protein Regulator
  C5L38_RS23275 (C5L38_23280) - 5125303..5126742 (-) 1440 WP_062755907.1 FGGY family carbohydrate kinase -
  C5L38_RS23280 (C5L38_23285) - 5126770..5127081 (-) 312 WP_062757103.1 hypothetical protein -
  C5L38_RS36730 - 5128178..5128453 (-) 276 WP_234363813.1 hypothetical protein -
  C5L38_RS36735 - 5128434..5129009 (+) 576 WP_229991662.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62539.62 Da        Isoelectric Point: 5.8596

>NTDB_id=229905 C5L38_RS23270 WP_062755905.1 5123352..5125085(-) (rcrP) [Streptomyces sp. WAC00288]
MLIRLLRTHLRPHRKPIALLVLLQFLQTCASLYLPTLNADIIDNGVVHGDTGYILRFGALMVGVSVVQIVCNVGAVYYGA
RTASALGRDVRGAVFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSGV
LLAVVPVLGVAVSLIVRRMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVKDGYEEERFRGANAELTDVSMATGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDGGGMEIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLATESSVVP
PAEPVTALDRRGHLEVRGAEFRYPGAEEPVLKDVGLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVDVR
ALDPALMARTVGLVPQKPYLFSGTVATNLRYGKPDATDEELWHALEVAQAADFVRKLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYETDALLRAALAEETADSTVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=229905 C5L38_RS23270 WP_062755905.1 5123352..5125085(-) (rcrP) [Streptomyces sp. WAC00288]
GTGCTCATAAGACTTCTCCGGACCCACCTACGGCCCCACCGAAAACCCATCGCGCTGCTCGTGCTGCTCCAGTTCCTGCA
GACCTGCGCGAGCCTCTACCTGCCGACCCTGAACGCCGACATCATCGACAACGGTGTCGTGCACGGGGACACCGGCTACA
TCCTGCGCTTCGGCGCCCTGATGGTCGGCGTCTCCGTCGTCCAGATCGTCTGCAACGTCGGGGCCGTGTACTACGGCGCG
CGGACCGCGTCCGCGCTCGGCCGGGACGTGCGCGGCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGGGAGCTGGG
GCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAACGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGGCGTTCA
CGCTGATGGTCTCCGCGCCCATCATGTGCGTCGGCGGCATCGTGATGGCGCTCGGCCAGGACGTGCCGCTGTCGGGCGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCGTCGCCGTGTCGCTGATCGTGCGGCGGATGCGGCCGCTCTTCCGGACCATGCA
GACGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGGGCCTTCGTGAAGGACG
GGTACGAGGAGGAGCGCTTCCGGGGGGCCAACGCCGAGCTGACCGACGTCTCGATGGCGACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACGGTGATGACGGTCGTGAACGTGTCCAGCGTGGCCGTGGTCTGGTTCGGCGCGCACCGCATCGACGGCGG
CGGGATGGAGATCGGCGCGCTGACCGCCTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTGGCGACCGAGTCGAGCGTGGTGCCG
CCGGCCGAGCCGGTGACGGCGCTCGACCGGCGCGGGCACCTGGAGGTCCGGGGCGCGGAGTTCCGCTACCCGGGCGCGGA
GGAACCGGTCCTCAAGGACGTCGGGCTCGTCGCCCGGCCCGGCGAGACCACCGCGATCATCGGCTCGACGGGCAGCGGCA
AGTCCACCCTCCTCGGGCTCGTGCCCCGGCTCTTCGACGCGACCGGCGGCGAGGTCCTCGTGGACGGCGTGGACGTGCGC
GCCCTCGACCCCGCGCTCATGGCGCGGACCGTCGGGCTCGTGCCCCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAAGCCCGACGCGACCGACGAGGAGCTGTGGCACGCCCTGGAGGTCGCCCAGGCCGCCGACTTCG
TACGGAAGCTCGAACACGGGCTGGACGCGCCGATCGCGCAGGGCGGCACCAACGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTCGTGCAGCGGCCGGAGATCTACCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGAGACGGA
CGCCCTGCTGCGGGCCGCGCTCGCCGAGGAGACGGCGGACTCGACGGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTGGGCACCGGGCGCCACCACGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAV4KP39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.463

97.227

0.393