Detailed information NTG0229670

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CA921_RS07200
• Genome accession: NZ_CP021283
• Coordinates: 1589124..1589987 (+)
• Length: 287 a.a.
• NCBI ID: WP_061692570.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain Allentown
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1584124..1594987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA921_RS07180	-	1584617..1584943 (-)	327	WP_011213802.1	DUF1820 family protein	-
CA921_RS07185	-	1585126..1585869 (-)	744	WP_061692569.1	methyltransferase domain-containing protein	-
CA921_RS07190	pilB	1586128..1587852 (+)	1725	WP_027265235.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CA921_RS07195	pilC	1587858..1589078 (+)	1221	WP_027265236.1	type II secretion system F family protein	Machinery gene
CA921_RS07200	pilD	1589124..1589987 (+)	864	WP_061692570.1	prepilin peptidase	Machinery gene
CA921_RS07205	-	1590001..1591206 (-)	1206	WP_061692571.1	cyclic nucleotide-binding domain-containing protein	-
CA921_RS07210	-	1591314..1591907 (-)	594	WP_027265239.1	hypothetical protein	-
CA921_RS07215	-	1591923..1592378 (-)	456	WP_010947256.1	hypothetical protein	-
CA921_RS07220	ppsR	1592512..1593327 (+)	816	WP_010947257.1	posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR	-
CA921_RS07225	-	1593447..1594895 (-)	1449	WP_061692572.1	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 32789.35 Da
• Isoelectric Point: 7.8442

>NTDB_id=229670 CA921_RS07200 WP_061692570.1 1589124..1589987(+) (pilD) [Legionella pneumophila subsp. pneumophila strain Allentown]
MINALIINYPWFMYLVVGLFSLAVGSLLNVIIYRLPIILQEEWKEQCCELFHFEQRKEKIKLNLFLPRSFCPHCKAMVKA
WQNIPLLSYILLRGRCYQCDSPISIRYPFVETLTTVLSLYASWHFGFTIQLLFALLAIWILISLVFIDLDHQLLPDSLTL
GLLWVGLIANTQNVFVSLDVAVLSCAGAYLALWLFINLFYLMTGKVGMGHGDFKLFAAFGAWLGWMYLPLILLISSITGA
IIGLIYLKINGKSRDTAIPFGPFLCISGLIAMFWGDSIINWYIGYWM

Nucleotide

• Length: 864 bp

>NTDB_id=229670 CA921_RS07200 WP_061692570.1 1589124..1589987(+) (pilD) [Legionella pneumophila subsp. pneumophila strain Allentown]
ATGATAAATGCACTAATAATCAATTATCCATGGTTTATGTATTTAGTCGTTGGGCTCTTTTCTCTAGCCGTTGGAAGTTT
GCTTAATGTGATAATCTATCGCTTACCAATTATTTTGCAGGAAGAGTGGAAAGAGCAATGCTGTGAGCTATTCCATTTTG
AACAGCGAAAAGAAAAAATAAAACTTAATTTATTTTTACCACGTTCTTTTTGTCCTCATTGTAAAGCGATGGTTAAAGCG
TGGCAGAATATTCCTCTGTTAAGCTATATTTTGTTAAGAGGGCGCTGTTACCAATGTGATAGTCCAATTTCAATCCGCTA
CCCTTTTGTTGAGACGTTGACCACAGTTTTATCCTTATACGCCAGTTGGCATTTTGGGTTTACAATACAATTATTATTTG
CTTTATTAGCTATCTGGATATTAATATCACTTGTTTTTATTGATCTTGATCATCAATTACTCCCTGATAGCCTCACTTTA
GGGCTCTTATGGGTTGGCCTTATTGCTAATACCCAGAATGTATTTGTTAGTCTTGACGTTGCTGTATTAAGCTGCGCTGG
CGCCTATTTAGCCTTATGGTTATTCATTAATCTGTTTTATCTGATGACAGGTAAAGTAGGTATGGGACATGGAGATTTCA
AATTATTTGCAGCATTTGGTGCCTGGCTTGGATGGATGTATTTACCATTAATTCTACTAATATCTTCAATAACGGGGGCT
ATCATTGGTTTGATTTATTTAAAGATAAATGGTAAATCAAGAGATACTGCAATACCATTTGGCCCTTTTCTTTGCATTTC
TGGATTAATAGCTATGTTTTGGGGAGACTCAATTATCAATTGGTATATAGGTTATTGGATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.11	97.909	0.481
pilD	Acinetobacter nosocomialis M2	47.985	95.122	0.456
pilD	Acinetobacter baumannii D1279779	47.273	95.819	0.453
pilD	Vibrio campbellii strain DS40M4	45.29	96.167	0.436
pilD	Neisseria gonorrhoeae MS11	42.446	96.864	0.411