Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CA924_RS05135 Genome accession   NZ_CP021281
Coordinates   1086777..1087361 (+) Length   194 a.a.
NCBI ID   WP_011213356.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Flint     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081777..1092361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA924_RS05115 - 1083127..1084134 (-) 1008 WP_011213352.1 hypothetical protein -
  CA924_RS05120 pilM 1084551..1085615 (+) 1065 WP_011213353.1 type IV pilus assembly protein PilM Machinery gene
  CA924_RS05125 pilN 1085619..1086167 (+) 549 WP_011213354.1 PilN domain-containing protein Machinery gene
  CA924_RS05130 pilO 1086181..1086780 (+) 600 WP_011213355.1 type 4a pilus biogenesis protein PilO Machinery gene
  CA924_RS05135 pilP 1086777..1087361 (+) 585 WP_011213356.1 pilus assembly protein PilP Machinery gene
  CA924_RS05140 pilQ 1087365..1089461 (+) 2097 WP_011213357.1 type IV pilus secretin PilQ Machinery gene
  CA924_RS05145 aroK 1089907..1090434 (+) 528 WP_010946667.1 shikimate kinase AroK -
  CA924_RS05150 aroB 1090421..1091530 (+) 1110 WP_011213358.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22206.70 Da        Isoelectric Point: 10.0815

>NTDB_id=229624 CA924_RS05135 WP_011213356.1 1086777..1087361(+) (pilP) [Legionella pneumophila subsp. pneumophila strain Flint]
MIIKNNQTLILGFFGNSLCTFLTSENFRKSLLTALLVLLLSACSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDDRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIRQPDGQISRVRVGDYMGQNYGRII
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=229624 CA924_RS05135 WP_011213356.1 1086777..1087361(+) (pilP) [Legionella pneumophila subsp. pneumophila strain Flint]
ATGATAATTAAAAATAACCAGACTCTTATATTAGGCTTTTTCGGAAATTCTCTGTGTACTTTCCTCACCTCAGAGAATTT
CCGAAAAAGCCTATTGACGGCGTTATTGGTTCTATTACTTAGTGCCTGCTCTGGTGATAACAGTGACCTTGTTAAGTACA
TCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTTCCA
GAAAACGATGATAGGCGAAATCCATTCAAACCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAAAAG
GCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCTGGG
CTCTGATTAGGCAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTATATGGGACAAAATTATGGACGTATTATT
TTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(49-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

100

100

1

Multiple sequence alignment