Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CA926_RS03485 Genome accession   NZ_CP021265
Coordinates   720454..722661 (-) Length   735 a.a.
NCBI ID   WP_028379724.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Los Angeles     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 715454..727661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA926_RS03465 - 715953..717884 (-) 1932 WP_027228442.1 hypothetical protein -
  CA926_RS03470 - 718011..718403 (-) 393 WP_027228443.1 hypothetical protein -
  CA926_RS03475 - 718540..718917 (+) 378 WP_027228444.1 hypothetical protein -
  CA926_RS03480 - 719117..720406 (+) 1290 WP_027228445.1 tetratricopeptide repeat protein -
  CA926_RS03485 comEC 720454..722661 (-) 2208 WP_028379724.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CA926_RS03490 pilE 722739..723188 (-) 450 WP_027228447.1 type IV pilin protein Machinery gene
  CA926_RS03495 - 723200..726709 (-) 3510 WP_028379725.1 PilC/PilY family type IV pilus protein -
  CA926_RS03500 - 726722..727234 (-) 513 WP_027228449.1 pilus assembly protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 83217.81 Da        Isoelectric Point: 9.5362

>NTDB_id=229326 CA926_RS03485 WP_028379724.1 720454..722661(-) (comEC) [Legionella pneumophila subsp. fraseri strain Los Angeles]
MEIFCFLIGVLYAYTDNIYLTIAIPLLFYITPRYPIVLFFLAGWGFALIHQWIVSPKGMPDTQVITQVQLEGTIASIPMQ
RPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPILRAGQRWQLSVKLKKPRNFRNPGGFNYVRYLAARHIHWAGYIRYGNN
KLINNHPPSFSWLTLREKIGDALTKLAPDMETAGIIEALTLNVTHHISSEHWNLFRRTGTIHLFGISGEHIALVSGIFFI
VIRWMWSMSYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCELYTIYAIGKQRFTPWQIWRYALFLVLCIE
PHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL
MTMIMSPFDWSWILMKPLAWLVALLLQGLTYVEQIAGINITWSITSGTMMLAMTAGLFLRVLLPVKPFKHLAILWIIIPL
FPPRTAIYPGEALINVLDVGQGLAVAIQTQHHVLLYDTGDSFFQGSDLGQMAIIPFFRSAEIKTIDTIVISHPDKDHKGG
LNSLEKEMQVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFLPIKESFTKKNNNSCILQVSNSAGRVLLTGDIEKAAED
YLVRNYGSELASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHVKTLQSMKTLGITFLRTDDCGMAGIKL
PASGKINKPTCMQAE

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=229326 CA926_RS03485 WP_028379724.1 720454..722661(-) (comEC) [Legionella pneumophila subsp. fraseri strain Los Angeles]
ATGGAAATTTTTTGCTTTTTAATAGGCGTACTTTATGCCTATACCGATAATATTTATCTAACTATTGCGATTCCTTTACT
CTTTTATATCACACCAAGATATCCAATTGTCCTGTTCTTCCTGGCCGGGTGGGGCTTTGCCCTGATTCACCAGTGGATTG
TATCACCCAAGGGAATGCCTGATACGCAAGTAATCACTCAAGTCCAATTGGAAGGAACAATTGCTTCCATCCCCATGCAA
CGTCCTAACAAAACCCAATTCCATTTTGCAATTGAAAAAATTAATAATAATCCTGCTCAAGGCTTAATCCAATTAAACTG
GTACAACAAACCACCTATCTTACGAGCCGGTCAGCGATGGCAACTTTCCGTAAAACTAAAAAAACCTCGTAATTTCCGCA
ACCCCGGAGGTTTTAATTATGTACGCTACCTGGCGGCTCGTCATATCCATTGGGCTGGTTATATTCGTTATGGGAATAAT
AAATTAATTAACAATCACCCCCCCTCTTTCAGTTGGTTAACACTACGTGAAAAAATAGGGGATGCTCTGACCAAACTGGC
ACCTGATATGGAAACAGCAGGCATTATCGAAGCATTGACGTTAAATGTAACTCACCATATCAGTTCAGAACATTGGAATT
TATTCCGACGAACGGGAACAATACATTTATTTGGGATATCAGGAGAGCACATCGCTCTGGTATCTGGCATTTTCTTTATC
GTGATAAGATGGATGTGGTCAATGAGCTATCGCTGTTGTTTATTCTTACCAGCCAATACCATAGCGAGTATCGGTGGATT
ACTAGCCGCCTTGCCCTATGCTTTTTTAGCAGGGTTTGAGCCTCCTGTACAGCGTGCTTTAATTGGTTGTGAACTTTACA
CAATATACGCCATTGGAAAACAACGCTTTACGCCATGGCAAATATGGAGATATGCCTTATTTTTAGTCTTGTGCATTGAA
CCCCACGCTGTATTCCTGCAAGGATTTTATTTTTCATTTCTTGCGGTGGCTTGTCTTCTATTGACTCACCAACGTTGGCC
ACTGAAAAACTATAAAAAGACACTTGCATTACAATTAAGCTGCCTTATTGGATTGATGCCTTTAACGCTCCATTGGTACT
CCTATGGCTCTATCAATGGATTTCTTGCCAATTTATTTGCCATACCTTTAGTCAGCTTTCTGATAGTACCCTTGGCTTTA
ATGACTATGATTATGAGTCCATTTGATTGGTCATGGATATTAATGAAACCATTGGCCTGGCTTGTTGCCCTGTTACTGCA
AGGGTTGACGTATGTTGAGCAAATAGCAGGGATCAATATCACCTGGTCCATCACCTCAGGAACAATGATGCTCGCTATGA
CAGCAGGTCTGTTTTTAAGAGTATTATTACCTGTCAAGCCATTCAAACACTTGGCTATCCTTTGGATTATCATTCCCTTA
TTTCCGCCCCGTACTGCAATTTACCCAGGAGAAGCATTAATTAATGTTTTGGATGTTGGACAAGGGCTGGCTGTTGCGAT
ACAAACGCAACATCATGTTTTACTCTACGATACGGGAGATTCATTTTTTCAAGGCAGTGATTTAGGGCAAATGGCAATAA
TACCTTTTTTTAGATCAGCTGAAATAAAAACCATTGATACCATTGTGATAAGCCATCCTGATAAAGATCATAAAGGTGGA
TTAAATTCCCTTGAAAAAGAGATGCAAGTCAATCAATTAATAGTGAATGATCCCTATTTTTATAAGCGTGGAAGCAATTG
TCATTCATACCCTCAATGGCAATGGGATGGGGTAAGTTTTCGTTTTTTACCCATCAAAGAGTCTTTCACTAAAAAAAATA
ACAACTCTTGTATTTTACAAGTAAGTAATTCAGCTGGCAGAGTTTTATTAACGGGAGATATTGAAAAAGCGGCTGAAGAC
TACCTGGTAAGAAACTACGGCAGTGAGCTGGCATCTGAAATTTTAGTTGTTCCTCATCATGGGAGTAAGACTTCTTCATC
TTATCGATTTTTACTGGAAGTAAACCCACTTTATGCGATTGCATCGTTGGGATTTGATAATCGCTTCAAATTTCCACACG
TCAAAACGTTGCAAAGCATGAAAACATTAGGTATCACTTTTTTAAGAACAGACGACTGCGGCATGGCAGGAATCAAACTA
CCTGCATCAGGTAAAATTAACAAACCAACCTGTATGCAGGCTGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(31-158)

Competence protein (Competence)

(199-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-579)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

94.959

99.864

0.948
  comEC Legionella pneumophila strain ERS1305867

94.422

100

0.944

Multiple sequence alignment