Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   CA930_RS05100 Genome accession   NZ_CP021263
Coordinates   1118230..1118829 (+) Length   199 a.a.
NCBI ID   WP_027221266.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-3137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1113230..1123829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA930_RS05085 ravI 1115174..1116181 (-) 1008 WP_027227632.1 Dot/Icm T4SS effector RavI -
  CA930_RS05090 pilM 1116600..1117664 (+) 1065 WP_027227633.1 type IV pilus assembly protein PilM Machinery gene
  CA930_RS05095 pilN 1117668..1118216 (+) 549 WP_027227634.1 PilN domain-containing protein Machinery gene
  CA930_RS05100 pilO 1118230..1118829 (+) 600 WP_027221266.1 type 4a pilus biogenesis protein PilO Machinery gene
  CA930_RS05105 pilP 1118826..1119410 (+) 585 WP_027227635.1 pilus assembly protein PilP Machinery gene
  CA930_RS05110 pilQ 1119414..1121510 (+) 2097 WP_027227636.1 type IV pilus secretin PilQ Machinery gene
  CA930_RS05115 aroK 1121962..1122483 (+) 522 WP_027219629.1 shikimate kinase AroK -
  CA930_RS05120 aroB 1122470..1123573 (+) 1104 WP_027227637.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22441.13 Da        Isoelectric Point: 5.3305

>NTDB_id=229248 CA930_RS05100 WP_027221266.1 1118230..1118829(+) (pilO) [Legionella pneumophila subsp. fraseri strain D-3137]
MDTVNLSELTLENVGQWPMPVKIGVILGISILIIGLGYWLIVKPNFEQLDTLEAQEIALKTEFEKKQHQAANLQAYRNQL
QLMNERFGTMLKQLPAKNEMPGLLEEISKTGIASGLKFELFAPQPEVVHDFYVELPIKITIVGSYMQLARFLSRVAEMNR
IVTLHEFSVEGVSSGDGKTVSQDELVMGITAKIYRYRAQ

Nucleotide


Download         Length: 600 bp        

>NTDB_id=229248 CA930_RS05100 WP_027221266.1 1118230..1118829(+) (pilO) [Legionella pneumophila subsp. fraseri strain D-3137]
ATGGATACAGTCAATTTAAGTGAATTAACTCTGGAGAATGTCGGCCAGTGGCCAATGCCGGTTAAAATCGGAGTCATTTT
AGGCATCAGTATATTGATAATTGGATTGGGATATTGGCTTATTGTTAAGCCTAATTTTGAGCAATTGGATACACTGGAAG
CCCAGGAAATTGCTTTGAAAACAGAGTTTGAAAAAAAACAACATCAGGCAGCAAATCTACAAGCCTATCGTAATCAGTTA
CAGTTAATGAATGAACGCTTCGGAACCATGCTAAAACAACTACCGGCAAAAAATGAAATGCCTGGTCTTTTGGAAGAAAT
ATCTAAAACAGGGATCGCATCGGGTTTGAAATTTGAATTGTTTGCACCACAACCTGAAGTAGTGCATGATTTTTATGTGG
AGTTACCTATAAAAATTACGATTGTCGGATCCTATATGCAATTAGCAAGATTTTTAAGTCGTGTCGCTGAAATGAACAGA
ATCGTGACTCTGCATGAATTTAGTGTTGAGGGGGTATCCTCCGGGGATGGTAAAACGGTCTCTCAGGATGAATTGGTGAT
GGGTATCACCGCTAAAATATACAGATATCGGGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(49-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

97.487

100

0.975
  comO Acinetobacter baylyi ADP1

39.894

94.472

0.377
  pilO Acinetobacter baumannii D1279779

38.22

95.98

0.367

Multiple sequence alignment