Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   CA931_RS04955 Genome accession   NZ_CP021262
Coordinates   1057580..1058164 (+) Length   194 a.a.
NCBI ID   WP_027221267.1    Uniprot ID   A0AAX2ITP2
Organism   Legionella pneumophila subsp. pascullei strain U8W (D-7160)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1052580..1063164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA931_RS04935 - 1053922..1054935 (-) 1014 WP_027221263.1 hypothetical protein -
  CA931_RS04940 pilM 1055354..1056418 (+) 1065 WP_027221264.1 pilus assembly protein PilM Machinery gene
  CA931_RS04945 pilN 1056422..1056970 (+) 549 WP_027221265.1 PilN domain-containing protein Machinery gene
  CA931_RS04950 pilO 1056984..1057583 (+) 600 WP_027221266.1 type 4a pilus biogenesis protein PilO Machinery gene
  CA931_RS04955 pilP 1057580..1058164 (+) 585 WP_027221267.1 pilus assembly protein PilP Machinery gene
  CA931_RS04960 pilQ 1058168..1060264 (+) 2097 WP_027221268.1 type IV pilus secretin PilQ Machinery gene
  CA931_RS04965 aroK 1060707..1061234 (+) 528 WP_032828804.1 shikimate kinase AroK -
  CA931_RS04970 aroB 1061221..1062324 (+) 1104 WP_027221270.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 194 a.a.        Molecular weight: 22133.62 Da        Isoelectric Point: 10.2170

>NTDB_id=229208 CA931_RS04955 WP_027221267.1 1057580..1058164(+) (pilP) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
MTIKYNQIPILDVCGNSLRTSFSAANFRKSLLMGLLVLLLSSCSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRIV
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=229208 CA931_RS04955 WP_027221267.1 1057580..1058164(+) (pilP) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
ATGACAATTAAATACAACCAAATTCCTATATTAGACGTTTGTGGAAATTCTTTGCGCACTTCATTCAGCGCAGCGAATTT
CCGAAAAAGTCTATTGATGGGGTTGTTAGTTCTATTACTTAGCTCCTGTTCTGGTGATAACAGTGATCTTGTTAAGTACA
TCAATGAAGTGAAATCAAGGCCAGGCAGACCTATCGAGCCTATTCCCAAATTTGCCCCTTTGCCAATTTTTAGATTTCCA
GAAAACGACAACAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGGAATGATATTTATGCTCCCGATAAAAAGAG
GCCGAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTCGTAGGTACTTTAAAAAAAGACAACGAAATTTGGG
CTCTGATTAAGCAACCTGATGGACAGATTAGCCGTGTGAGGGTTGGAGATTATATGGGACAAAATTATGGTCGTATTGTT
TTGATTAAAAATGATCTCATTAAACTGGAAGAAACGGTACAAAAATCAGGGACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTGA

Domains


Predicted by InterproScan.

(49-188)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

90.206

100

0.902


Multiple sequence alignment