Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CA934_RS07960 Genome accession   NZ_CP021259
Coordinates   1722643..1723506 (+) Length   287 a.a.
NCBI ID   WP_106225290.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7708     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1717643..1728506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS07940 - 1718082..1718408 (-) 327 WP_027221707.1 DUF1820 family protein -
  CA934_RS07945 - 1718591..1719334 (-) 744 WP_106225289.1 methyltransferase domain-containing protein -
  CA934_RS07950 pilB 1719647..1721371 (+) 1725 WP_027227022.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CA934_RS07955 pilC 1721377..1722597 (+) 1221 WP_027221710.1 type II secretion system F family protein Machinery gene
  CA934_RS07960 pilD 1722643..1723506 (+) 864 WP_106225290.1 A24 family peptidase Machinery gene
  CA934_RS07965 - 1723520..1724725 (-) 1206 WP_192877192.1 cyclic nucleotide-binding domain-containing protein -
  CA934_RS07970 - 1724835..1725428 (-) 594 WP_028378909.1 hypothetical protein -
  CA934_RS07975 - 1725444..1725899 (-) 456 WP_027227026.1 hypothetical protein -
  CA934_RS07980 - 1726047..1726862 (+) 816 WP_028378911.1 pyruvate, water dikinase regulatory protein -
  CA934_RS07985 - 1726944..1728398 (-) 1455 WP_027227028.1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32865.56 Da        Isoelectric Point: 8.0734

>NTDB_id=229173 CA934_RS07960 WP_106225290.1 1722643..1723506(+) (pilD) [Legionella pneumophila strain D-7708]
MINTLIINYPWFMYLLIGLFSLAVGSLLNVIIYRLPIILQEEWREQCCELLNLEQRKEKIKFNLFLPRSFCPHCKAMVKA
WQNIPLLSYILLRGRCYQCNSPISIRYPLIELLTTVLSLYASWHFGFTVQLLFVLLAIWILIPLTFIDLDHQLLPDSLTL
GLLWLGLIANTWSIFVSLDIAVLSCAGAYLALWLFINLFYLITGKVGMGHGDFKLFAAFGAWFGWVYLPLILLMSSITGA
IIGLIYLRINGKSRDTAIPFGPFLCISGLIAMFLGDSIINWYIGYWM

Nucleotide


Download         Length: 864 bp        

>NTDB_id=229173 CA934_RS07960 WP_106225290.1 1722643..1723506(+) (pilD) [Legionella pneumophila strain D-7708]
ATGATAAATACGCTAATAATCAATTATCCCTGGTTTATGTATTTACTCATCGGACTCTTTTCTTTGGCCGTTGGAAGTTT
ACTTAATGTTATCATCTATCGCTTACCAATTATTTTGCAGGAAGAATGGCGAGAACAATGCTGTGAGTTACTTAATCTTG
AACAGCGAAAAGAAAAAATAAAATTTAATCTATTTTTACCACGTTCATTTTGCCCTCATTGTAAAGCGATGGTTAAAGCG
TGGCAGAATATTCCCCTATTAAGCTATATCTTGTTAAGAGGACGCTGTTACCAATGCAACAGTCCCATTTCAATTCGCTA
TCCCCTTATTGAGTTATTGACCACAGTGTTATCATTATACGCCAGTTGGCACTTTGGATTTACAGTACAATTATTATTTG
TTTTATTAGCCATCTGGATATTGATACCTCTTACTTTTATTGATCTTGATCATCAATTACTCCCTGATAGTCTCACTTTA
GGACTATTATGGCTTGGTCTTATTGCAAATACATGGAGTATATTTGTTAGTCTTGATATTGCTGTGTTAAGTTGTGCCGG
CGCCTACTTAGCCTTATGGTTATTCATTAATCTATTTTATCTGATTACAGGTAAGGTAGGTATGGGGCATGGTGATTTCA
AATTATTTGCAGCATTTGGCGCATGGTTTGGCTGGGTGTATTTACCATTAATTCTTCTGATGTCTTCAATAACCGGAGCT
ATCATTGGTTTGATTTATTTAAGGATAAATGGTAAATCAAGAGATACTGCAATACCATTTGGTCCTTTTCTTTGCATTTC
CGGGTTAATAGCTATGTTTTTGGGGGACTCCATTATCAATTGGTATATAGGTTATTGGATGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50.534

97.909

0.495
  pilD Acinetobacter nosocomialis M2

48.718

95.122

0.463
  pilD Acinetobacter baumannii D1279779

48

95.819

0.46
  pilD Vibrio campbellii strain DS40M4

46.763

96.864

0.453
  pilD Neisseria gonorrhoeae MS11

46.763

96.864

0.453

Multiple sequence alignment