Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   B9N48_RS17770 Genome accession   NZ_CP021169
Coordinates   3396428..3397117 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain TLO3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3391428..3402117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS17735 flgN 3391608..3392090 (-) 483 WP_014481048.1 flagellar protein FlgN -
  B9N48_RS17740 flgM 3392106..3392372 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  B9N48_RS17745 yvyF 3392453..3392872 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  B9N48_RS17750 comFC 3392946..3393668 (-) 723 WP_130572909.1 comF operon protein ComFC Machinery gene
  B9N48_RS17755 comFB 3393632..3393928 (-) 297 WP_015483764.1 late competence protein ComFB -
  B9N48_RS17760 comFA 3393988..3395379 (-) 1392 WP_086344383.1 ATP-dependent helicase ComFA Machinery gene
  B9N48_RS17765 fakBA 3395485..3396330 (-) 846 WP_086344384.1 DegV family protein -
  B9N48_RS17770 degU 3396428..3397117 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B9N48_RS17775 degS 3397200..3398357 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  B9N48_RS17780 yvyE 3398574..3399227 (+) 654 WP_003227979.1 YigZ family protein -
  B9N48_RS17785 tagV 3399227..3400402 (+) 1176 WP_086344385.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  B9N48_RS17790 tagO 3400475..3401551 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=228801 B9N48_RS17770 WP_003219701.1 3396428..3397117(-) (degU) [Bacillus subtilis strain TLO3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=228801 B9N48_RS17770 WP_003219701.1 3396428..3397117(-) (degU) [Bacillus subtilis strain TLO3]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment