Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   B9N48_RS17750 Genome accession   NZ_CP021169
Coordinates   3392946..3393668 (-) Length   240 a.a.
NCBI ID   WP_130572909.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3387946..3398668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS17715 fliW 3388085..3388516 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  B9N48_RS17720 yviE 3388537..3389112 (-) 576 WP_086344382.1 DUF6470 family protein -
  B9N48_RS17725 flgL 3389159..3390055 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  B9N48_RS17730 flgK 3390066..3391589 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  B9N48_RS17735 flgN 3391608..3392090 (-) 483 WP_014481048.1 flagellar protein FlgN -
  B9N48_RS17740 flgM 3392106..3392372 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  B9N48_RS17745 yvyF 3392453..3392872 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  B9N48_RS17750 comFC 3392946..3393668 (-) 723 WP_130572909.1 comF operon protein ComFC Machinery gene
  B9N48_RS17755 comFB 3393632..3393928 (-) 297 WP_015483764.1 late competence protein ComFB -
  B9N48_RS17760 comFA 3393988..3395379 (-) 1392 WP_086344383.1 ATP-dependent helicase ComFA Machinery gene
  B9N48_RS17765 fakBA 3395485..3396330 (-) 846 WP_086344384.1 DegV family protein -
  B9N48_RS17770 degU 3396428..3397117 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B9N48_RS17775 degS 3397200..3398357 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27496.69 Da        Isoelectric Point: 9.1349

>NTDB_id=228799 B9N48_RS17750 WP_130572909.1 3392946..3393668(-) (comFC) [Bacillus subtilis strain TLO3]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRSRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMDIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=228799 B9N48_RS17750 WP_130572909.1 3392946..3393668(-) (comFC) [Bacillus subtilis strain TLO3]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGAGCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGGATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment