Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AM457_RS18120 Genome accession   NZ_CP026761
Coordinates   3792405..3794426 (-) Length   673 a.a.
NCBI ID   WP_001004983.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0078     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3787405..3799426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM457_RS18095 (AM457_18095) - 3787424..3788098 (-) 675 WP_000468068.1 hypothetical protein -
  AM457_RS18100 (AM457_18100) - 3788110..3788844 (-) 735 WP_001183836.1 hypothetical protein -
  AM457_RS18105 (AM457_18105) - 3788994..3790451 (-) 1458 WP_000031228.1 glyceraldehyde-3-phosphate dehydrogenase -
  AM457_RS18110 (AM457_18110) rarD 3790668..3791615 (-) 948 WP_168030210.1 EamA family transporter RarD -
  AM457_RS18115 (AM457_18115) - 3791724..3792311 (-) 588 WP_000885644.1 lipocalin family protein -
  AM457_RS18120 (AM457_18120) uvrB 3792405..3794426 (-) 2022 WP_001004983.1 excinuclease ABC subunit UvrB Machinery gene
  AM457_RS18125 (AM457_18125) - 3794606..3795397 (+) 792 WP_000222202.1 hypothetical protein -
  AM457_RS18130 (AM457_18130) - 3795572..3797008 (+) 1437 WP_000448849.1 sensor domain-containing diguanylate cyclase -
  AM457_RS18135 (AM457_18135) - 3797043..3797222 (-) 180 WP_000139632.1 hypothetical protein -
  AM457_RS18140 (AM457_18140) - 3797430..3798665 (+) 1236 WP_000383202.1 pyridoxal phosphate-dependent aminotransferase -
  AM457_RS18145 (AM457_18145) - 3798717..3799127 (-) 411 WP_001014251.1 GFA family protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77278.03 Da        Isoelectric Point: 5.3381

>NTDB_id=228672 AM457_RS18120 WP_001004983.1 3792405..3794426(-) (uvrB) [Acinetobacter baumannii strain AR_0078]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=228672 AM457_RS18120 WP_001004983.1 3792405..3794426(-) (uvrB) [Acinetobacter baumannii strain AR_0078]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
GAATGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGCGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGCCCGACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTTAAA
GCTTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCATC
AGATACATTTATTGAAAAAGACGCGGCAATTAATGACCATATTGACCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCGATTATTGTTGCTTCTGTTTCGGCCATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGATCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACCCGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCCGACCAACATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGATGGTTTGATCCGCTTACCGGTAAAATGGTCCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGAGCTATCGATACCATTAAGGA
TGAATTGCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTACTCGAAGCGCAGCGTATCGAGCAACGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGCTACACCAATGGTATCGAAAACTACTCACGTCATTTATCGGGACGACCGGCA
GGGGAAGCACCACCGACTTTATTTGACTATGTACCAGAAGATGCCTTACTTATTATTGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCGACGACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAACTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACGGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCGGTACTTACCCAAGTCGATGATGTTTTGTCTGAAATTAATATTCGTAAGAACTTAAATGAGCGTGTATTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCATACCTGCACTCGGAT
ATTGATACAGTTGAACGTGTCAAAATTATTCATGAGTTACGTACAGGCGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCCTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAGACGATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGCCGACGTGCAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACGCC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCACAAGCACTTAGCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCACATTACTAAG
CTAGAGAAAGAAATGTTAAAGGCGTCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae R6

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae D39

57.997

99.406

0.577