Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AM457_RS10335 Genome accession   NZ_CP026761
Coordinates   2190601..2191308 (-) Length   235 a.a.
NCBI ID   WP_000203217.1    Uniprot ID   V5VF83
Organism   Acinetobacter baumannii strain AR_0078     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2185601..2196308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM457_RS10315 (AM457_10315) - 2186678..2187997 (+) 1320 WP_000517792.1 adenylosuccinate synthase -
  AM457_RS10320 (AM457_10320) - 2188119..2188436 (+) 318 WP_000776215.1 hypothetical protein -
  AM457_RS10325 (AM457_10325) - 2188553..2189332 (+) 780 WP_001034598.1 M48 family metallopeptidase -
  AM457_RS10330 (AM457_10330) - 2189391..2190440 (-) 1050 WP_001159805.1 NADP(H)-dependent aldo-keto reductase -
  AM457_RS10335 (AM457_10335) crp 2190601..2191308 (-) 708 WP_000203217.1 cAMP-activated global transcriptional regulator CRP Regulator
  AM457_RS10340 (AM457_10340) - 2191684..2192774 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  AM457_RS18755 - 2192793..2192858 (+) 66 Protein_1973 hypothetical protein -
  AM457_RS10345 (AM457_10345) - 2192996..2194086 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  AM457_RS10350 (AM457_10350) - 2194126..2194548 (+) 423 WP_001195082.1 OsmC family protein -
  AM457_RS10355 (AM457_10355) - 2194643..2195068 (+) 426 WP_001026233.1 GNAT family N-acetyltransferase -
  AM457_RS10360 (AM457_10360) - 2195065..2195871 (-) 807 WP_001237331.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26567.18 Da        Isoelectric Point: 4.6625

>NTDB_id=228653 AM457_RS10335 WP_000203217.1 2190601..2191308(-) (crp) [Acinetobacter baumannii strain AR_0078]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=228653 AM457_RS10335 WP_000203217.1 2190601..2191308(-) (crp) [Acinetobacter baumannii strain AR_0078]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCAGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGTCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTGATACTTCATTAGAAGAAACCCCAGTCACTGACGAAGACTACGATGACGAAGAATAA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VF83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.574

100

0.996
  crp Vibrio cholerae strain A1552

47.343

88.085

0.417
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4