Detailed information NTG0228565

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CAY59_RS03755
• Genome accession: NZ_CP021145
• Coordinates: 743099..743968 (-)
• Length: 289 a.a.
• NCBI ID: WP_045395355.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LA16-V1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 738099..748968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAY59_RS03720 (CAY59_03675)	rpsP	739022..739270 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
CAY59_RS03725 (CAY59_03680)	rimM	739298..739846 (+)	549	WP_005534055.1	ribosome maturation factor RimM	-
CAY59_RS03730 (CAY59_03685)	trmD	739874..740617 (+)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
CAY59_RS03735 (CAY59_03690)	rplS	740659..741012 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
CAY59_RS03740 (CAY59_03700)	yacG	741459..741659 (-)	201	WP_012128882.1	DNA gyrase inhibitor YacG	-
CAY59_RS03745 (CAY59_03705)	zapD	741716..742456 (-)	741	WP_012128881.1	cell division protein ZapD	-
CAY59_RS03750 (CAY59_03710)	coaE	742484..743098 (-)	615	WP_012128880.1	dephospho-CoA kinase	-
CAY59_RS03755 (CAY59_03715)	pilD	743099..743968 (-)	870	WP_045395355.1	A24 family peptidase	Machinery gene
CAY59_RS03760 (CAY59_03720)	-	744041..745262 (-)	1222	Protein_621	type II secretion system F family protein	-
CAY59_RS03765 (CAY59_03725)	pilB	745297..746982 (-)	1686	WP_086368982.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CAY59_RS03770 (CAY59_03730)	-	746982..747416 (-)	435	WP_050917749.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CAY59_RS03780 (CAY59_03740)	nadC	747682..748569 (-)	888	WP_050917751.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32521.72 Da
• Isoelectric Point: 7.5715

>NTDB_id=228565 CAY59_RS03755 WP_045395355.1 743099..743968(-) (pilD) [Vibrio campbellii strain LA16-V1]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHSCHSSISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWTGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=228565 CAY59_RS03755 WP_045395355.1 743099..743968(-) (pilD) [Vibrio campbellii strain LA16-V1]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTGATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAGCTGCCACTCGTCCATCAGCGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGATCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGACAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTTGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGCATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.578	100	0.976
pilD	Vibrio cholerae strain A1552	75	99.654	0.747
pilD	Acinetobacter baumannii D1279779	52.03	93.772	0.488
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439