Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   CAY59_RS02695 Genome accession   NZ_CP021145
Coordinates   548244..548888 (-) Length   214 a.a.
NCBI ID   WP_005432827.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 543244..553888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS02685 (CAY59_02640) uvrA 544246..547068 (-) 2823 WP_086368945.1 excinuclease ABC subunit UvrA -
  CAY59_RS02690 (CAY59_02645) galU 547207..548079 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CAY59_RS02695 (CAY59_02650) qstR 548244..548888 (-) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  CAY59_RS02700 (CAY59_02655) ssb 549182..549718 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  CAY59_RS02705 (CAY59_02660) csrD 549966..551975 (+) 2010 WP_086368946.1 RNase E specificity factor CsrD -
  CAY59_RS02710 (CAY59_02665) - 551987..553435 (+) 1449 WP_086368947.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24551.46 Da        Isoelectric Point: 8.0591

>NTDB_id=228556 CAY59_RS02695 WP_005432827.1 548244..548888(-) (qstR) [Vibrio campbellii strain LA16-V1]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=228556 CAY59_RS02695 WP_005432827.1 548244..548888(-) (qstR) [Vibrio campbellii strain LA16-V1]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCCGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTGTTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGCAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACTTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTAATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment