Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CAY59_RS02240 Genome accession   NZ_CP021145
Coordinates   450663..451295 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio campbellii strain LA16-V1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 445663..456295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS02225 (CAY59_02195) astA 446875..447894 (+) 1020 WP_012126464.1 arginine N-succinyltransferase -
  CAY59_RS02230 (CAY59_02200) astD 447923..449380 (+) 1458 WP_005432762.1 succinylglutamate-semialdehyde dehydrogenase -
  CAY59_RS02235 (CAY59_02205) - 449645..450436 (+) 792 WP_012126462.1 DUF1338 domain-containing protein -
  CAY59_RS02240 (CAY59_02210) crp 450663..451295 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  CAY59_RS02245 (CAY59_02215) - 451535..452404 (-) 870 WP_005432770.1 phosphoribulokinase -
  CAY59_RS02250 (CAY59_02220) - 452529..452741 (-) 213 WP_005432763.1 YheU family protein -
  CAY59_RS02255 (CAY59_02225) - 452812..453819 (-) 1008 WP_045370245.1 hydrolase -
  CAY59_RS02260 (CAY59_02230) - 453920..454399 (-) 480 WP_005432772.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=228550 CAY59_RS02240 WP_005381432.1 450663..451295(-) (crp) [Vibrio campbellii strain LA16-V1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=228550 CAY59_RS02240 WP_005381432.1 450663..451295(-) (crp) [Vibrio campbellii strain LA16-V1]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTAGGCCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment