Detailed information NTG0228506

Bioinformatically predicted

Overview

• Name: comL
• Type: Machinery gene
• Locus tag: CAP31_RS08440
• Genome accession: NZ_CP021138
• Coordinates: 1653572..1654363 (+)
• Length: 263 a.a.
• NCBI ID: WP_087447135.1
• Uniprot ID: A0A1Y0G7P9
• Organism: Sulfuriferula sp. AH1
• Function: DNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1648572..1659363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAP31_RS08405 (CAP31_08395)	flgM	1648598..1648909 (+)	312	WP_087447128.1	flagellar biosynthesis anti-sigma factor FlgM	-
CAP31_RS08410 (CAP31_08400)	-	1648916..1649389 (+)	474	WP_087447129.1	flagella synthesis protein FlgN	-
CAP31_RS08415 (CAP31_08405)	rimO	1649429..1650742 (-)	1314	WP_087447130.1	30S ribosomal protein S12 methylthiotransferase RimO	-
CAP31_RS08420 (CAP31_08410)	-	1650774..1650962 (+)	189	WP_087447131.1	hypothetical protein	-
CAP31_RS08425 (CAP31_08415)	-	1650953..1651735 (-)	783	WP_087447132.1	ZIP family metal transporter	-
CAP31_RS08430 (CAP31_08420)	pgeF	1651820..1652554 (-)	735	WP_087447133.1	peptidoglycan editing factor PgeF	-
CAP31_RS08435 (CAP31_08425)	rluD	1652599..1653573 (-)	975	WP_087447134.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
CAP31_RS08440 (CAP31_08430)	comL	1653572..1654363 (+)	792	WP_087447135.1	outer membrane protein assembly factor BamD	Machinery gene
CAP31_RS08445 (CAP31_08435)	-	1654370..1655038 (+)	669	WP_087447136.1	HAD family phosphatase	-
CAP31_RS08450 (CAP31_08440)	pcnB	1655087..1656439 (+)	1353	WP_087447137.1	polynucleotide adenylyltransferase PcnB	-
CAP31_RS08455 (CAP31_08445)	folK	1656432..1656947 (+)	516	WP_087447138.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
CAP31_RS08460 (CAP31_08450)	-	1657082..1657726 (+)	645	WP_189836602.1	deoxynucleoside kinase	-
CAP31_RS08465 (CAP31_08455)	panB	1657736..1658533 (+)	798	WP_087447139.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-

Sequence

Protein

• Length: 263 a.a.
• Molecular weight: 30268.23 Da
• Isoelectric Point: 8.6797

>NTDB_id=228506 CAP31_RS08440 WP_087447135.1 1653572..1654363(+) (comL) [Sulfuriferula sp. AH1]
MKRSLLVLLLIGLVGCGSTPTTNDETKNWSAQKIYAEAKDMLNSGSYDKSIKLFETLEARYPYGRYAQQAQLEVAYAYYK
DNEPVSAVAACDRFIKLHPNHPNVDYAYYLKGLANFTEDQSLFARIADQDMTERDPRSANSSFESFRELSTRFPNSKYTP
DAIARMKYLVDALAWHEVHVAQYYYKRGAYIAAVNRAQYALVHYPQAPANELGLAIMVRAYDAMGTNDLRDDALRVLQKN
FPASKYVNGNFDRKKPWWRFWEL

Nucleotide

• Length: 792 bp

>NTDB_id=228506 CAP31_RS08440 WP_087447135.1 1653572..1654363(+) (comL) [Sulfuriferula sp. AH1]
ATGAAACGAAGTTTACTTGTTTTACTGCTAATTGGGTTGGTTGGTTGTGGCAGCACGCCCACCACCAATGACGAAACCAA
AAATTGGTCAGCTCAAAAGATTTACGCCGAAGCCAAAGATATGCTCAATTCGGGTAGTTATGATAAATCCATCAAATTAT
TCGAAACCCTGGAAGCGCGTTATCCCTACGGGCGTTATGCTCAACAGGCGCAACTCGAGGTGGCTTACGCATATTATAAA
GACAATGAACCCGTCTCGGCAGTTGCCGCATGCGACCGCTTCATCAAATTGCATCCGAATCATCCCAATGTCGATTACGC
CTACTATCTCAAGGGGCTGGCGAACTTTACCGAAGACCAAAGCCTGTTCGCTCGCATAGCAGATCAGGATATGACCGAAC
GCGACCCTCGTTCTGCGAATAGCTCGTTTGAGTCATTTCGAGAATTGTCTACTCGTTTTCCTAACAGCAAATACACCCCG
GATGCCATTGCGCGAATGAAGTATCTGGTAGACGCGCTTGCCTGGCATGAAGTTCACGTCGCGCAATATTATTACAAGCG
CGGCGCCTACATTGCTGCAGTCAATCGTGCTCAATATGCGTTGGTACATTATCCACAAGCCCCTGCCAATGAACTCGGGC
TGGCGATAATGGTTCGCGCTTATGACGCAATGGGCACCAACGATCTGCGCGATGACGCATTACGCGTGTTGCAAAAGAAC
TTTCCTGCCAGCAAATATGTCAATGGCAACTTCGATCGCAAGAAACCATGGTGGAGATTCTGGGAATTATAA

Domains

Predicted by InterproScan.

• Outer membrane lipoprotein (YfiO) (30-233)

3D structure

• AlphaFold DB: A0A1Y0G7P9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comL	Neisseria meningitidis MC58	48.872	100	0.494
comL	Neisseria gonorrhoeae MS11	47.744	100	0.483