Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   B6D87_RS06485 Genome accession   NZ_CP021132
Coordinates   1383564..1385780 (+) Length   738 a.a.
NCBI ID   WP_169846339.1    Uniprot ID   -
Organism   Pseudomonas fragi strain NMC25     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1378564..1390780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6D87_RS06465 (B6D87_06455) - 1380400..1381026 (+) 627 WP_086796061.1 glutathione S-transferase -
  B6D87_RS06470 (B6D87_06460) - 1381160..1382092 (+) 933 WP_016779931.1 ABC transporter ATP-binding protein -
  B6D87_RS06475 (B6D87_06465) - 1382089..1382868 (+) 780 WP_016779932.1 ABC transporter permease -
  B6D87_RS06480 (B6D87_06470) - 1382914..1383429 (-) 516 WP_016779933.1 DUF2062 domain-containing protein -
  B6D87_RS06485 (B6D87_06475) comA 1383564..1385780 (+) 2217 WP_169846339.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B6D87_RS06490 (B6D87_06480) exbB 1385829..1386464 (+) 636 WP_029611293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B6D87_RS06495 (B6D87_06485) - 1386461..1386889 (+) 429 WP_016779937.1 biopolymer transporter ExbD -
  B6D87_RS06500 (B6D87_06490) lpxK 1386889..1387899 (+) 1011 WP_086796063.1 tetraacyldisaccharide 4'-kinase -
  B6D87_RS06505 (B6D87_06495) - 1387921..1388106 (+) 186 WP_086796064.1 Trm112 family protein -
  B6D87_RS06510 (B6D87_06500) kdsB 1388103..1388867 (+) 765 WP_086796065.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B6D87_RS06515 (B6D87_06505) murB 1388864..1389883 (+) 1020 WP_083369823.1 UDP-N-acetylmuramate dehydrogenase -
  B6D87_RS06520 (B6D87_06510) - 1389899..1390510 (+) 612 WP_169844637.1 hypothetical protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79774.82 Da        Isoelectric Point: 10.2383

>NTDB_id=228468 B6D87_RS06485 WP_169846339.1 1383564..1385780(+) (comA) [Pseudomonas fragi strain NMC25]
MYTGMLALAAGLMTLRFLPVLPSVGWLLLMLVAGLLLLACRAWPLGLFVLGLSWGCMQGQRALDDRLADSFDGRTLWVEG
RVIGLPQQSGKSVRFELQGAKSRHGALPATIRLSWYGGPSVNSGERWRLAVKLKKPKGLLNPQGFDFEAWLLAQRIGATG
TVKQGQLQQAASHAWRDGLRQRLSGVDAQGRGAWLAALVLGDGSGLSRDDWALLQATGTVHLLVISGQHIGLFAGLIYGL
VALLARYGLWPGFLPWLPWACALAFIGATGYGLLAGFEVPVQRACAMLGLVLAWRLWFRQLGVWLPFLLALNAVLIVEPL
ASLRAGLWLSFSAVAVLLFTFSGRLGAWGWRAMWLRPQGLIALGLFPVLWILDLPISLTGPLANLLAVPWISLAVLPTAL
LGTLLLPVPWLGENLLWLSGGLIDVLVQGLSLLADVFKPWLPASVPVYLWLLSAGGVLILLLPAGLVLRPLGWPLVLLAL
FAPREPIPHGQVEVLQLDVGQGLAIALRTRNHTLLYDAGPKFGDLDQGERVVVPVLRSLGVGALDLMLLSHADADHAGGA
LAVQRAINVARVVSGDVPGLAPQLRAQPCVSGHSWEWDGVRFALWQWAGASDSNQKSCVLQVQAGDERLLLTGDIDARAE
RELLKSPLAVPTRWLQAPHHGSKTSSSMVFLKALAPEIVLISRGHGNSFGHPHPQVMARYQALGVQVLDSAEQGAVKFRL
GVSGKAESMRDQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=228468 B6D87_RS06485 WP_169846339.1 1383564..1385780(+) (comA) [Pseudomonas fragi strain NMC25]
ATGTACACAGGGATGTTGGCGCTGGCAGCGGGCCTGATGACGCTGCGCTTTTTACCGGTTTTACCGTCTGTCGGGTGGTT
GCTGCTGATGCTGGTGGCGGGGCTATTGCTGTTGGCCTGCAGGGCCTGGCCGCTGGGGCTTTTTGTGCTTGGGTTGAGCT
GGGGCTGCATGCAGGGGCAAAGGGCGCTGGATGATCGTCTGGCGGATTCATTCGACGGGCGTACCCTCTGGGTTGAGGGG
CGTGTTATCGGGTTGCCGCAGCAGTCCGGCAAGTCCGTTCGTTTTGAGTTGCAAGGGGCAAAGTCGCGGCACGGCGCGCT
GCCCGCGACCATCAGGCTGAGCTGGTATGGCGGGCCCTCCGTGAACAGCGGCGAGCGCTGGCGGCTGGCGGTCAAACTCA
AGAAGCCCAAGGGCTTGCTCAACCCTCAGGGGTTTGATTTTGAAGCCTGGTTACTGGCGCAGCGCATCGGTGCCACTGGC
ACAGTCAAGCAGGGGCAACTGCAGCAAGCCGCCAGCCACGCCTGGCGTGACGGCTTGCGCCAACGCCTGTCAGGGGTTGA
TGCCCAAGGCCGGGGCGCCTGGCTGGCAGCGCTGGTCCTGGGTGACGGGTCGGGCCTGAGCCGGGATGACTGGGCGCTGC
TGCAGGCGACCGGCACGGTGCATTTGCTGGTGATCTCGGGGCAGCATATCGGCCTGTTTGCCGGCTTGATCTACGGGTTG
GTCGCCCTGCTGGCGCGTTACGGGCTGTGGCCAGGCTTTTTGCCGTGGCTGCCCTGGGCGTGTGCCCTGGCGTTTATCGG
CGCCACAGGCTATGGCCTGCTGGCCGGCTTTGAAGTGCCAGTACAGCGGGCATGCGCGATGCTCGGTCTGGTGCTGGCAT
GGCGTTTGTGGTTTCGCCAGCTGGGGGTGTGGCTGCCTTTTTTGCTGGCGCTCAATGCGGTGTTGATCGTCGAACCGCTG
GCGAGTTTGCGGGCGGGGTTGTGGTTGTCATTCAGTGCCGTGGCGGTGCTGCTTTTTACCTTCAGCGGCCGTTTGGGGGC
GTGGGGGTGGCGGGCCATGTGGCTGCGCCCTCAGGGCCTGATAGCCCTGGGCTTGTTCCCGGTGCTGTGGATCCTCGATT
TGCCCATCAGCCTGACCGGGCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGCCTGGCGGTGCTGCCCACGGCACTG
CTGGGGACCTTGCTGCTGCCTGTGCCCTGGCTGGGGGAAAACCTGCTGTGGTTATCGGGTGGCCTGATTGATGTGCTGGT
GCAGGGTTTGAGCCTGCTGGCCGATGTGTTCAAGCCCTGGTTGCCCGCCTCGGTGCCGGTTTACCTTTGGTTGTTGAGTG
CTGGTGGAGTGCTGATCCTGTTGTTGCCAGCGGGGTTGGTGTTGCGGCCGTTGGGCTGGCCGCTGGTGCTGCTGGCGCTG
TTCGCGCCCCGGGAGCCAATCCCCCACGGTCAGGTCGAGGTGCTGCAACTGGATGTCGGCCAGGGCCTGGCCATTGCTTT
GCGTACCCGCAATCACACGCTGTTGTATGACGCTGGCCCCAAGTTCGGCGATCTGGATCAGGGGGAGCGGGTGGTGGTGC
CGGTTTTGCGCTCTCTGGGCGTTGGTGCGCTGGATTTGATGCTGCTCAGCCATGCTGACGCCGATCATGCGGGTGGCGCG
CTGGCAGTGCAGCGCGCGATCAACGTGGCGCGGGTGGTCAGCGGTGATGTACCTGGGCTGGCGCCGCAGTTGCGGGCGCA
ACCCTGTGTCAGTGGCCACAGCTGGGAGTGGGACGGGGTGCGGTTTGCACTCTGGCAGTGGGCGGGGGCGAGCGACAGTA
ATCAAAAGTCCTGCGTGCTACAGGTGCAGGCTGGCGATGAACGGTTGCTGCTGACCGGGGATATCGACGCCAGGGCCGAG
CGTGAGTTGCTGAAAAGCCCGTTGGCCGTGCCCACCCGTTGGTTGCAGGCCCCGCACCACGGCAGCAAGACTTCGTCGTC
GATGGTGTTTCTCAAGGCGCTGGCGCCTGAAATCGTGCTGATATCCCGGGGGCATGGTAATAGCTTCGGTCATCCCCATC
CGCAGGTGATGGCCCGGTATCAGGCGCTGGGGGTGCAGGTACTGGACAGCGCCGAGCAGGGTGCGGTGAAATTTCGTCTC
GGGGTGTCGGGCAAGGCTGAAAGCATGCGTGACCAACGCCGCTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Competence protein (Competence)

(198-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.971

97.425

0.575
  comA Ralstonia pseudosolanacearum GMI1000

34.231

100

0.362

Multiple sequence alignment