Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   B6D87_RS06490 Genome accession   NZ_CP021132
Coordinates   1385829..1386464 (+) Length   211 a.a.
NCBI ID   WP_029611293.1    Uniprot ID   -
Organism   Pseudomonas fragi strain NMC25     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380829..1391464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6D87_RS06470 (B6D87_06460) - 1381160..1382092 (+) 933 WP_016779931.1 ABC transporter ATP-binding protein -
  B6D87_RS06475 (B6D87_06465) - 1382089..1382868 (+) 780 WP_016779932.1 ABC transporter permease -
  B6D87_RS06480 (B6D87_06470) - 1382914..1383429 (-) 516 WP_016779933.1 DUF2062 domain-containing protein -
  B6D87_RS06485 (B6D87_06475) comA 1383564..1385780 (+) 2217 WP_169846339.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B6D87_RS06490 (B6D87_06480) exbB 1385829..1386464 (+) 636 WP_029611293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B6D87_RS06495 (B6D87_06485) - 1386461..1386889 (+) 429 WP_016779937.1 biopolymer transporter ExbD -
  B6D87_RS06500 (B6D87_06490) lpxK 1386889..1387899 (+) 1011 WP_086796063.1 tetraacyldisaccharide 4'-kinase -
  B6D87_RS06505 (B6D87_06495) - 1387921..1388106 (+) 186 WP_086796064.1 Trm112 family protein -
  B6D87_RS06510 (B6D87_06500) kdsB 1388103..1388867 (+) 765 WP_086796065.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B6D87_RS06515 (B6D87_06505) murB 1388864..1389883 (+) 1020 WP_083369823.1 UDP-N-acetylmuramate dehydrogenase -
  B6D87_RS06520 (B6D87_06510) - 1389899..1390510 (+) 612 WP_169844637.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23020.24 Da        Isoelectric Point: 6.8765

>NTDB_id=228469 B6D87_RS06490 WP_029611293.1 1385829..1386464(+) (exbB) [Pseudomonas fragi strain NMC25]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNTLGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAILAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDDLVVGMEQEAIKLVEVVQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=228469 B6D87_RS06490 WP_029611293.1 1385829..1386464(+) (exbB) [Pseudomonas fragi strain NMC25]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCGGAGCATTTGCTCGGCCAGGTCTGGGTCTGGATCAAAGACA
AACAGATGGACAAGGAAAAACTCAAGCAGCTGCGCGCCGATTCACCCCTGGGGGAGATTCTCGCTGCCGGCCTGGCCAAC
TCCCGGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAGGCCGCCGCGCGGGTCATTCACGAGCTGGAGCGCTACCT
CAATACCCTGGGCACCATCGCGGCAATGGCGCCGTTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAATGCTGCCATCCTGGCGGGCGGTATTTCCAAGGCGCTGATCACCACGGCT
GCAGGCCTGATGGTGGGTATCCCGGCGGTATTCTTCCATCGTTTCCTGCAGCGTCGCGTTGACGACTTGGTGGTCGGCAT
GGAGCAGGAGGCAATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGAAGTCGACATGGTCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment