Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CAH07_RS05030 Genome accession   NZ_CP021123
Coordinates   987635..988279 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SEM-9     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 982635..993279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS05000 (CAH07_04955) - 982985..983353 (-) 369 WP_046381300.1 hypothetical protein -
  CAH07_RS05005 - 983468..983593 (-) 126 WP_003228793.1 hypothetical protein -
  CAH07_RS05010 (CAH07_04960) degQ 983815..983955 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  CAH07_RS05015 (CAH07_04965) - 984140..985003 (+) 864 WP_043858576.1 polyprenyl synthetase family protein -
  CAH07_RS05020 (CAH07_04970) comX 985005..985226 (+) 222 WP_014480704.1 competence pheromone ComX -
  CAH07_RS05025 (CAH07_04975) comP 985242..987554 (+) 2313 WP_032722435.1 histidine kinase Regulator
  CAH07_RS05030 (CAH07_04980) comA 987635..988279 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  CAH07_RS05035 (CAH07_04985) yuxO 988298..988678 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  CAH07_RS05040 (CAH07_04990) mnhG 988719..989093 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  CAH07_RS05045 (CAH07_04995) mrpF 989077..989361 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  CAH07_RS05050 (CAH07_05000) mrpE 989361..989837 (-) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  CAH07_RS05055 (CAH07_05005) mrpD 989843..991324 (-) 1482 WP_029318491.1 Na+/H+ antiporter subunit D -
  CAH07_RS05060 (CAH07_05010) mrpC 991317..991658 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  CAH07_RS05065 (CAH07_05015) mrpB 991658..992089 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=228372 CAH07_RS05030 WP_003220716.1 987635..988279(+) (comA) [Bacillus subtilis strain SEM-9]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=228372 CAH07_RS05030 WP_003220716.1 987635..988279(+) (comA) [Bacillus subtilis strain SEM-9]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment