Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C4J65_RS03020 Genome accession   NZ_CP026730
Coordinates   652141..652803 (+) Length   220 a.a.
NCBI ID   WP_115740966.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 647141..657803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS02990 (C4J65_02985) - 647148..647531 (+) 384 WP_115740960.1 Rid family detoxifying hydrolase -
  C4J65_RS02995 (C4J65_02990) - 647748..648281 (+) 534 WP_115740961.1 GNAT family N-acetyltransferase -
  C4J65_RS03000 (C4J65_02995) - 648708..649148 (-) 441 WP_115740962.1 hypothetical protein -
  C4J65_RS03005 (C4J65_03000) - 649215..649940 (-) 726 WP_115740963.1 ABC transporter permease -
  C4J65_RS03010 (C4J65_03005) - 649937..650863 (-) 927 WP_115740964.1 ABC transporter ATP-binding protein -
  C4J65_RS03015 (C4J65_03010) - 650972..652126 (+) 1155 WP_115740965.1 histidine kinase -
  C4J65_RS03020 (C4J65_03015) vraR 652141..652803 (+) 663 WP_115740966.1 response regulator transcription factor Regulator
  C4J65_RS03025 (C4J65_03020) - 652903..654057 (+) 1155 WP_115740967.1 ROK family transcriptional regulator -
  C4J65_RS03030 (C4J65_03025) - 654096..654857 (-) 762 WP_115740968.1 GntR family transcriptional regulator -
  C4J65_RS03035 (C4J65_03030) - 655059..655946 (-) 888 WP_115740969.1 RNA polymerase sigma-70 factor -
  C4J65_RS03040 (C4J65_03035) - 656100..656978 (+) 879 WP_162832992.1 alpha/beta fold hydrolase -
  C4J65_RS03045 (C4J65_03040) - 656930..657799 (-) 870 WP_115740971.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23563.17 Da        Isoelectric Point: 5.0141

>NTDB_id=228370 C4J65_RS03020 WP_115740966.1 652141..652803(+) (vraR) [Streptomyces sp. CB09001]
MPVRVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQVRPDVVAMDVRMPLLDGIEATRALLRTVADPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRQLAAEYGDGGGNRAARAELERARLTER
EGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=228370 C4J65_RS03020 WP_115740966.1 652141..652803(+) (vraR) [Streptomyces sp. CB09001]
ATGCCGGTCAGAGTGCTCCTCGTCGACGACGAACCCCTGGTGCGCGCCGGTCTGCGGGCCGTGCTGGAGGCGCAGCCGGA
CATCGAGGTGGTCGGTGAGGCGGCCGACGGGGCGGCGGTCATTCCGCTGGTGCGGCAGGTGCGGCCGGACGTGGTCGCCA
TGGACGTCCGGATGCCGCTGCTGGACGGGATCGAGGCCACCCGCGCGCTGCTGCGGACGGTGGCCGACCCGCCGAAGATC
CTCGTGGTGACGACCTTCGAGAACGACGAGTACGTGTACGAGGCCCTGCGCGCGGGCGCCGACGGCTTCCTGCTCAAGCG
GGCCCGCCCGGCCGAGATCGTGCACGCGGTGCGGCTGATCGCCGAGGGCGAGTCCCTGCTGTTCCCCGCCTCGGTGCGGC
AGCTGGCCGCCGAGTACGGCGACGGGGGCGGGAACCGCGCGGCCCGCGCCGAGTTGGAGCGCGCCCGGCTGACCGAACGG
GAGGGCGAGGTGCTGCGGCTGATGGCGCGGGGGCTGTCGAACGCGGAGATCGCCGCACGGCTGGTGGTCGGCACGGAGAC
GGTGAAGTCGCACGTGAGCGCCGTCCTGGCGAAGCTGGGGGCACGCGACCGCACCCAGGCGGTGATCACGGCGTACGAGT
CGGGGTTCGTCGCGCCCGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.273

100

0.423
  degU Bacillus subtilis subsp. subtilis str. 168

37.054

100

0.377

Multiple sequence alignment