Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C4J65_RS03555 Genome accession   NZ_CP026730
Coordinates   758319..758954 (+) Length   211 a.a.
NCBI ID   WP_115741058.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 753319..763954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS03525 (C4J65_03520) - 753350..753889 (-) 540 WP_115741053.1 Clp protease N-terminal domain-containing protein -
  C4J65_RS03530 (C4J65_03525) - 754087..754275 (+) 189 WP_162832940.1 hypothetical protein -
  C4J65_RS03535 (C4J65_03530) - 754384..755037 (-) 654 WP_115746282.1 PadR family transcriptional regulator -
  C4J65_RS03540 (C4J65_03535) - 755138..755824 (-) 687 WP_115741055.1 ABC transporter ATP-binding protein -
  C4J65_RS03545 (C4J65_03540) - 755821..756933 (-) 1113 WP_115741056.1 ABC transporter permease -
  C4J65_RS03550 (C4J65_03545) - 757108..758322 (+) 1215 WP_115741057.1 sensor histidine kinase -
  C4J65_RS03555 (C4J65_03550) vraR 758319..758954 (+) 636 WP_115741058.1 response regulator transcription factor Regulator
  C4J65_RS03560 (C4J65_03555) - 759183..759992 (+) 810 WP_115741059.1 PhzF family phenazine biosynthesis protein -
  C4J65_RS03565 (C4J65_03560) - 760021..760848 (-) 828 WP_115741060.1 type II CAAX endopeptidase family protein -
  C4J65_RS03570 (C4J65_03565) - 760930..762447 (-) 1518 WP_115741061.1 glutamate--cysteine ligase -
  C4J65_RS03575 (C4J65_03570) - 763007..763591 (+) 585 WP_162833001.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 21837.94 Da        Isoelectric Point: 5.3202

>NTDB_id=228371 C4J65_RS03555 WP_115741058.1 758319..758954(+) (vraR) [Streptomyces sp. CB09001]
MTDSPVRLLLADDHPVVRAGLRAVLETEPGMVVVAEAATAEEAVARAARGDIDVVLMDLQFGGGMNGAEATAAIAARPGA
PRVLIVTTYDSDADTLPAIEAGATGYLLKDAPPEDLADAVRTAAAGRTALAPAVADRLMNRLRTPSTTLTRRETEVLALV
AGGLSNQAIGQRLHLTEGTVKSHLARVYAKLDVDSRTAAVATAASLGLIRR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=228371 C4J65_RS03555 WP_115741058.1 758319..758954(+) (vraR) [Streptomyces sp. CB09001]
GTGACCGACAGCCCCGTCCGCCTGCTCCTCGCCGACGACCACCCCGTGGTCAGGGCCGGGCTGCGCGCCGTACTGGAGAC
CGAACCCGGCATGGTGGTGGTGGCCGAGGCGGCCACCGCCGAGGAGGCCGTCGCGCGCGCCGCGCGGGGCGACATCGACG
TCGTGCTGATGGACCTGCAGTTCGGCGGGGGAATGAACGGCGCCGAGGCCACCGCCGCCATCGCCGCCCGCCCCGGGGCC
CCGCGGGTGCTGATCGTCACCACGTACGACTCCGACGCCGACACCCTGCCCGCCATCGAAGCCGGCGCCACGGGCTACCT
CCTCAAGGACGCACCGCCCGAGGACCTGGCCGACGCCGTACGCACCGCCGCCGCCGGACGCACCGCGCTGGCGCCCGCCG
TCGCCGACCGGCTCATGAACCGGCTGCGCACCCCGAGCACCACCCTGACCCGGCGCGAGACGGAGGTCCTGGCGCTGGTG
GCCGGTGGTCTGTCCAACCAGGCCATCGGCCAACGGCTCCACCTCACCGAGGGCACCGTCAAGTCCCACCTGGCCCGCGT
CTACGCCAAGCTCGACGTCGACTCGCGCACCGCCGCCGTCGCCACCGCGGCCTCCCTCGGCCTGATCCGCCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

98.578

0.37
  degU Bacillus subtilis subsp. subtilis str. 168

33.628

100

0.36

Multiple sequence alignment