Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C4J65_RS01820 Genome accession   NZ_CP026730
Coordinates   368418..369083 (-) Length   221 a.a.
NCBI ID   WP_115740757.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 363418..374083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS01795 (C4J65_01790) cytR 364532..365554 (+) 1023 WP_115740752.1 LacI family DNA-binding transcriptional regulator Regulator
  C4J65_RS01800 (C4J65_01795) - 365682..366854 (+) 1173 WP_115740753.1 MFS transporter -
  C4J65_RS01805 (C4J65_01800) - 366934..367674 (+) 741 WP_115740754.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  C4J65_RS01810 (C4J65_01805) - 367699..368097 (-) 399 WP_162832973.1 MarR family transcriptional regulator -
  C4J65_RS01815 (C4J65_01810) - 368173..368457 (+) 285 WP_115740756.1 DUF6332 family protein -
  C4J65_RS01820 (C4J65_01815) vraR 368418..369083 (-) 666 WP_115740757.1 response regulator transcription factor Regulator
  C4J65_RS01825 (C4J65_01820) - 369080..370327 (-) 1248 WP_115746254.1 sensor histidine kinase -
  C4J65_RS01830 (C4J65_01825) - 370789..372048 (-) 1260 WP_115740758.1 geranylgeranyl reductase family protein -
  C4J65_RS01835 (C4J65_01830) - 372193..373548 (+) 1356 WP_115740759.1 dipeptidase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24082.85 Da        Isoelectric Point: 4.9113

>NTDB_id=228367 C4J65_RS01820 WP_115740757.1 368418..369083(-) (vraR) [Streptomyces sp. CB09001]
MIRVLLADDQSLVRAGFRALLDAQSDIEVVAEAADGEEAVRSIRELRPDVVLMDIRMPLLDGLAATRRITGDPGLHDVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRLIAEFAARSKEPAAAGEMARLTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=228367 C4J65_RS01820 WP_115740757.1 368418..369083(-) (vraR) [Streptomyces sp. CB09001]
GTGATCCGCGTACTGCTCGCCGACGACCAGTCACTGGTACGGGCCGGTTTCCGGGCGCTGCTGGACGCTCAGTCGGACAT
CGAGGTGGTCGCGGAGGCCGCCGACGGCGAGGAGGCGGTGCGCTCGATCCGCGAACTGCGCCCCGACGTCGTCCTCATGG
ACATCCGCATGCCCCTGCTCGACGGCCTCGCCGCGACCCGCCGGATCACCGGCGACCCGGGGCTGCACGACGTGAAGGTG
GTCATGCTCACCACCTTCGAACTCGACGAGTACGTCTTCGAGGCGATTCGCTCCGGCGCCTCCGGCTTCCTGGTCAAGGA
CACCGAACCCGAGGAACTCCTGCGCGCCGTGCGGGCGGTGGTGGACGGCGACGCGCTGCTGTCGCCGGGGGTGACGCGCC
GGCTGATCGCCGAGTTCGCGGCCCGTTCCAAGGAGCCCGCGGCGGCCGGCGAGATGGCCCGGCTGACCGAACGGGAGCGC
GAGGTGATGGCCCTGGTCGGCATCGGCCTGTCCAACGAGGAGATCGCCCGCCGGCTGGTCGTCAGCCCGCTGACCGCCAA
GACCCACGTCAGCCGGACCATGGTGAAACTGGGCGCCCGCGACCGTGCCCAACTGGTCGTCCTGGCCTACGAGTCGGGGC
TGGTACGGCCGGGCTGGCTCGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

97.285

0.389
  degU Bacillus subtilis subsp. subtilis str. 168

36.444

100

0.371

Multiple sequence alignment