Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CAH07_RS03080 Genome accession   NZ_CP021123
Coordinates   600420..601142 (+) Length   240 a.a.
NCBI ID   WP_033884179.1    Uniprot ID   -
Organism   Bacillus subtilis strain SEM-9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 595420..606142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS03055 (CAH07_03015) degS 595731..596888 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  CAH07_RS03060 (CAH07_03020) degU 596971..597660 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CAH07_RS03065 (CAH07_03025) fakBA 597758..598603 (+) 846 WP_003244125.1 DegV family protein -
  CAH07_RS03070 (CAH07_03030) comFA 598709..600100 (+) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  CAH07_RS03075 (CAH07_03035) comFB 600160..600456 (+) 297 WP_014478130.1 late competence protein ComFB -
  CAH07_RS03080 (CAH07_03040) comFC 600420..601142 (+) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  CAH07_RS03085 (CAH07_03045) yvyF 601215..601634 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  CAH07_RS03090 (CAH07_03050) flgM 601715..601981 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  CAH07_RS03095 (CAH07_03055) flgN 601997..602479 (+) 483 WP_014478127.1 flagellar protein FlgN -
  CAH07_RS03100 (CAH07_03060) flgK 602498..604021 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  CAH07_RS03105 (CAH07_03065) flgL 604032..604928 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  CAH07_RS03110 (CAH07_03070) yviE 604975..605550 (+) 576 WP_015384781.1 DUF6470 family protein -
  CAH07_RS03115 (CAH07_03075) fliW 605571..606002 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27544.83 Da        Isoelectric Point: 9.3157

>NTDB_id=228367 CAH07_RS03080 WP_033884179.1 600420..601142(+) (comFC) [Bacillus subtilis strain SEM-9]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=228367 CAH07_RS03080 WP_033884179.1 600420..601142(+) (comFC) [Bacillus subtilis strain SEM-9]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988

Multiple sequence alignment