Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CAH07_RS03070 Genome accession   NZ_CP021123
Coordinates   598709..600100 (+) Length   463 a.a.
NCBI ID   WP_101172232.1    Uniprot ID   -
Organism   Bacillus subtilis strain SEM-9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593709..605100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS03050 (CAH07_03010) yvyE 594861..595514 (-) 654 WP_003227979.1 YigZ family protein -
  CAH07_RS03055 (CAH07_03015) degS 595731..596888 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  CAH07_RS03060 (CAH07_03020) degU 596971..597660 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CAH07_RS03065 (CAH07_03025) fakBA 597758..598603 (+) 846 WP_003244125.1 DegV family protein -
  CAH07_RS03070 (CAH07_03030) comFA 598709..600100 (+) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  CAH07_RS03075 (CAH07_03035) comFB 600160..600456 (+) 297 WP_014478130.1 late competence protein ComFB -
  CAH07_RS03080 (CAH07_03040) comFC 600420..601142 (+) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  CAH07_RS03085 (CAH07_03045) yvyF 601215..601634 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  CAH07_RS03090 (CAH07_03050) flgM 601715..601981 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  CAH07_RS03095 (CAH07_03055) flgN 601997..602479 (+) 483 WP_014478127.1 flagellar protein FlgN -
  CAH07_RS03100 (CAH07_03060) flgK 602498..604021 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  CAH07_RS03105 (CAH07_03065) flgL 604032..604928 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52655.85 Da        Isoelectric Point: 10.1764

>NTDB_id=228366 CAH07_RS03070 WP_101172232.1 598709..600100(+) (comFA) [Bacillus subtilis strain SEM-9]
MNVPVEKNSSFSKELQQRLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGAEISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIKFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=228366 CAH07_RS03070 WP_101172232.1 598709..600100(+) (comFA) [Bacillus subtilis strain SEM-9]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGAGGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGAAATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAAAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.704

100

0.987

Multiple sequence alignment