Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CAH07_RS03060 Genome accession   NZ_CP021123
Coordinates   596971..597660 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SEM-9     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 591971..602660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS03040 (CAH07_03000) tagO 592537..593613 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  CAH07_RS03045 (CAH07_03005) tagV 593686..594861 (-) 1176 WP_029318786.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  CAH07_RS03050 (CAH07_03010) yvyE 594861..595514 (-) 654 WP_003227979.1 YigZ family protein -
  CAH07_RS03055 (CAH07_03015) degS 595731..596888 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  CAH07_RS03060 (CAH07_03020) degU 596971..597660 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CAH07_RS03065 (CAH07_03025) fakBA 597758..598603 (+) 846 WP_003244125.1 DegV family protein -
  CAH07_RS03070 (CAH07_03030) comFA 598709..600100 (+) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  CAH07_RS03075 (CAH07_03035) comFB 600160..600456 (+) 297 WP_014478130.1 late competence protein ComFB -
  CAH07_RS03080 (CAH07_03040) comFC 600420..601142 (+) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  CAH07_RS03085 (CAH07_03045) yvyF 601215..601634 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  CAH07_RS03090 (CAH07_03050) flgM 601715..601981 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  CAH07_RS03095 (CAH07_03055) flgN 601997..602479 (+) 483 WP_014478127.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=228365 CAH07_RS03060 WP_003219701.1 596971..597660(+) (degU) [Bacillus subtilis strain SEM-9]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=228365 CAH07_RS03060 WP_003219701.1 596971..597660(+) (degU) [Bacillus subtilis strain SEM-9]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment