Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C4R22_RS08565 Genome accession   NZ_CP026723
Coordinates   1666352..1667089 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 266917_2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1661352..1672089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4R22_RS08550 clpC 1661806..1664379 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C4R22_RS08555 yfiH 1664509..1665240 (-) 732 WP_001551518.1 purine nucleoside phosphorylase YfiH -
  C4R22_RS08560 rluD 1665237..1666217 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C4R22_RS08565 comL 1666352..1667089 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C4R22_RS08575 raiA 1667360..1667701 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C4R22_RS08580 pheL 1667805..1667852 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C4R22_RS08585 pheA 1667951..1669111 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  C4R22_RS08590 tyrA 1669154..1670275 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C4R22_RS08595 aroF 1670286..1671356 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C4R22_RS08600 yfiL 1671565..1671930 (+) 366 WP_019842457.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=228300 C4R22_RS08565 WP_000197686.1 1666352..1667089(+) (comL) [Escherichia coli strain 266917_2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=228300 C4R22_RS08565 WP_000197686.1 1666352..1667089(+) (comL) [Escherichia coli strain 266917_2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment