Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CAL14_RS06260 Genome accession   NZ_CP021110
Coordinates   1358970..1359734 (-) Length   254 a.a.
NCBI ID   WP_232462593.1    Uniprot ID   -
Organism   Bordetella genomosp. 9 strain AU14267     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1353970..1364734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL14_RS06250 (CAL14_06245) tex 1354110..1356503 (-) 2394 WP_086059299.1 RNA-binding transcriptional accessory protein Tex -
  CAL14_RS06255 (CAL14_06250) - 1356664..1358859 (+) 2196 WP_086059300.1 ATP-dependent DNA helicase -
  CAL14_RS06260 (CAL14_06255) comL 1358970..1359734 (-) 765 WP_232462593.1 outer membrane protein assembly factor BamD Machinery gene
  CAL14_RS06265 (CAL14_06260) - 1359872..1360831 (+) 960 WP_086056707.1 RluA family pseudouridine synthase -
  CAL14_RS06270 (CAL14_06265) pgeF 1360828..1361613 (+) 786 WP_086056708.1 peptidoglycan editing factor PgeF -
  CAL14_RS06275 (CAL14_06270) - 1361774..1363414 (+) 1641 WP_086056709.1 PHA/PHB synthase family protein -
  CAL14_RS06280 (CAL14_06275) phbB 1363496..1364233 (+) 738 WP_086056710.1 acetoacetyl-CoA reductase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28879.41 Da        Isoelectric Point: 5.4107

>NTDB_id=228294 CAL14_RS06260 WP_232462593.1 1358970..1359734(-) (comL) [Bordetella genomosp. 9 strain AU14267]
MLLAACASSGTKVDKTAGWSAEQLYNDGKQEMDAGNWKDARDRMTAVESRYPFGIYAQQALMNLAYINWKDGENEQALAA
IDRFQQLYPNHPGTDYMLYLKGLINFTPASAFMTNLTGQDPSERDPKGLRASYDAFNELIKRYPDSKYAADAKLRVVWLV
NAIAGNEVHVARYYYERGAYVAAANRAQTVITDFQGAPATEEALYILYKSYEKLNMPQLEKDAKRVLDANFPNSKYPTQG
FAQDKNWWDPWSWL

Nucleotide


Download         Length: 765 bp        

>NTDB_id=228294 CAL14_RS06260 WP_232462593.1 1358970..1359734(-) (comL) [Bordetella genomosp. 9 strain AU14267]
GTGCTGCTCGCCGCCTGCGCGTCCAGCGGCACCAAGGTCGATAAGACCGCCGGCTGGAGCGCCGAACAGCTTTACAACGA
CGGCAAGCAGGAAATGGACGCCGGCAACTGGAAAGACGCCCGCGACCGCATGACGGCCGTCGAAAGCCGCTATCCGTTCG
GCATCTACGCGCAGCAGGCGCTGATGAACCTGGCGTACATCAACTGGAAGGACGGCGAGAATGAGCAGGCCCTGGCCGCC
ATCGACCGCTTCCAGCAGCTGTATCCCAACCACCCCGGCACGGACTACATGCTTTACCTGAAGGGTTTGATCAATTTCAC
GCCCGCCAGCGCATTCATGACCAATCTCACCGGCCAGGATCCCAGCGAACGCGATCCCAAGGGCCTGCGGGCGTCGTATG
ACGCCTTCAACGAGCTGATCAAGCGCTACCCGGACAGCAAGTACGCGGCGGATGCCAAGCTGCGCGTGGTCTGGCTGGTC
AACGCAATTGCCGGCAACGAAGTTCACGTGGCGCGCTATTACTACGAACGCGGCGCCTACGTGGCCGCGGCCAACCGGGC
GCAAACGGTGATCACGGATTTCCAGGGCGCCCCGGCGACCGAGGAAGCGCTGTACATCCTGTACAAGTCCTACGAAAAGC
TGAACATGCCTCAGCTGGAAAAGGACGCGAAGCGGGTGCTGGACGCCAATTTCCCGAACAGCAAGTACCCCACCCAGGGT
TTCGCGCAGGACAAGAACTGGTGGGACCCCTGGAGCTGGCTGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(21-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.047

100

0.484
  comL Neisseria gonorrhoeae MS11

46.875

100

0.472

Multiple sequence alignment