Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | AM435_RS10430 | Genome accession | NZ_CP026707 |
| Coordinates | 1907357..1907872 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AR_0056 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1902357..1912872
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM435_RS10410 (AM435_10405) | - | 1902676..1904136 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| AM435_RS10415 (AM435_10410) | - | 1904413..1905618 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| AM435_RS20890 | - | 1905637..1905780 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| AM435_RS10425 (AM435_10420) | omp38 | 1905905..1906975 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| AM435_RS10430 (AM435_10425) | fimT | 1907357..1907872 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| AM435_RS10435 (AM435_10430) | - | 1907981..1909156 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| AM435_RS10440 (AM435_10435) | - | 1909283..1909726 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| AM435_RS10445 (AM435_10440) | - | 1909769..1910122 (-) | 354 | WP_000457787.1 | DMT family transporter | - |
| AM435_RS10450 (AM435_10445) | - | 1910205..1910690 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| AM435_RS10455 (AM435_10450) | - | 1910683..1912326 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=228157 AM435_RS10430 WP_000477147.1 1907357..1907872(+) (fimT) [Acinetobacter baumannii strain AR_0056]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=228157 AM435_RS10430 WP_000477147.1 1907357..1907872(+) (fimT) [Acinetobacter baumannii strain AR_0056]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |