Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | MCCS_RS07110 | Genome accession | NZ_CP021059 |
| Coordinates | 1365630..1366601 (-) | Length | 323 a.a. |
| NCBI ID | WP_086042732.1 | Uniprot ID | - |
| Organism | Macrococcoides canis strain KM 45013 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1315419..1365679 | 1365630..1366601 | flank | -49 |
Gene organization within MGE regions
Location: 1315419..1366601
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MCCS_RS06735 (MCCS_13860) | - | 1315419..1316246 (-) | 828 | WP_086042658.1 | SH3 domain-containing protein | - |
| MCCS_RS06740 (MCCS_13870) | - | 1316248..1316514 (-) | 267 | WP_086042659.1 | phage holin | - |
| MCCS_RS06745 (MCCS_13880) | - | 1316560..1316946 (-) | 387 | WP_086042660.1 | hypothetical protein | - |
| MCCS_RS12610 | - | 1317177..1317398 (+) | 222 | WP_157891064.1 | hypothetical protein | - |
| MCCS_RS06755 (MCCS_13910) | - | 1317587..1318222 (-) | 636 | WP_086042662.1 | hypothetical protein | - |
| MCCS_RS06760 (MCCS_13920) | - | 1318377..1320413 (-) | 2037 | WP_086042663.1 | NosD domain-containing protein | - |
| MCCS_RS06765 (MCCS_13930) | - | 1320400..1320684 (-) | 285 | WP_086042664.1 | hypothetical protein | - |
| MCCS_RS06770 (MCCS_13940) | - | 1320695..1322488 (-) | 1794 | WP_086042665.1 | phage tail spike protein | - |
| MCCS_RS06775 (MCCS_13950) | - | 1322488..1322922 (-) | 435 | WP_086042666.1 | hypothetical protein | - |
| MCCS_RS06780 (MCCS_13960) | - | 1322915..1328569 (-) | 5655 | WP_086042667.1 | LysM peptidoglycan-binding domain-containing protein | - |
| MCCS_RS06785 (MCCS_13970) | - | 1328609..1328992 (-) | 384 | WP_086042668.1 | hypothetical protein | - |
| MCCS_RS06790 (MCCS_13980) | - | 1328947..1329468 (-) | 522 | WP_086042669.1 | hypothetical protein | - |
| MCCS_RS06795 (MCCS_13990) | - | 1329546..1330136 (-) | 591 | WP_086042670.1 | hypothetical protein | - |
| MCCS_RS06800 (MCCS_14000) | - | 1330200..1330580 (-) | 381 | WP_086042671.1 | minor capsid protein | - |
| MCCS_RS06805 (MCCS_14010) | - | 1330585..1331067 (-) | 483 | WP_157891065.1 | HK97 gp10 family phage protein | - |
| MCCS_RS12615 (MCCS_14020) | - | 1331057..1331389 (-) | 333 | WP_157891066.1 | hypothetical protein | - |
| MCCS_RS06810 (MCCS_14030) | - | 1331401..1331784 (-) | 384 | WP_086042673.1 | hypothetical protein | - |
| MCCS_RS06815 (MCCS_14040) | - | 1331802..1332077 (-) | 276 | WP_086042674.1 | hypothetical protein | - |
| MCCS_RS06820 (MCCS_14050) | - | 1332119..1333123 (-) | 1005 | WP_086042675.1 | major capsid protein | - |
| MCCS_RS06825 (MCCS_14060) | - | 1333150..1333524 (-) | 375 | WP_086042676.1 | hypothetical protein | - |
| MCCS_RS06830 (MCCS_14070) | - | 1333537..1334142 (-) | 606 | WP_086042677.1 | phage scaffolding protein | - |
| MCCS_RS06835 (MCCS_14080) | - | 1334397..1334588 (-) | 192 | WP_086042678.1 | hypothetical protein | - |
| MCCS_RS06840 (MCCS_14090) | - | 1334605..1334862 (-) | 258 | WP_086042679.1 | hypothetical protein | - |
| MCCS_RS06845 (MCCS_14100) | - | 1334849..1335070 (-) | 222 | WP_086042680.1 | hypothetical protein | - |
| MCCS_RS06850 (MCCS_14110) | - | 1335159..1336235 (-) | 1077 | WP_086042681.1 | phage minor capsid protein | - |
| MCCS_RS06855 (MCCS_14120) | - | 1336247..1336684 (-) | 438 | WP_086042682.1 | hypothetical protein | - |
| MCCS_RS06860 (MCCS_14130) | - | 1336668..1338308 (-) | 1641 | WP_086042683.1 | hypothetical protein | - |
| MCCS_RS06865 (MCCS_14140) | - | 1338321..1339613 (-) | 1293 | WP_086042684.1 | PBSX family phage terminase large subunit | - |
| MCCS_RS06870 (MCCS_14150) | - | 1339610..1340323 (-) | 714 | WP_086042685.1 | hypothetical protein | - |
| MCCS_RS06875 (MCCS_14160) | - | 1340489..1340992 (-) | 504 | WP_157891067.1 | HNH endonuclease | - |
| MCCS_RS06880 (MCCS_14170) | - | 1341168..1342040 (-) | 873 | WP_086042687.1 | hypothetical protein | - |
| MCCS_RS06885 (MCCS_14180) | - | 1342107..1342511 (-) | 405 | WP_086042688.1 | hypothetical protein | - |
| MCCS_RS06890 (MCCS_14190) | - | 1342528..1343013 (-) | 486 | WP_086042689.1 | Holliday junction resolvase RecU | - |
| MCCS_RS06895 (MCCS_14200) | dut | 1343056..1343478 (-) | 423 | WP_086042690.1 | dUTP diphosphatase | - |
| MCCS_RS06900 (MCCS_14210) | - | 1343459..1343641 (-) | 183 | WP_086042691.1 | hypothetical protein | - |
| MCCS_RS06905 (MCCS_14220) | - | 1343631..1344110 (-) | 480 | WP_086042692.1 | hypothetical protein | - |
| MCCS_RS06910 (MCCS_14230) | - | 1344111..1344383 (-) | 273 | WP_157891068.1 | hypothetical protein | - |
| MCCS_RS06915 (MCCS_14240) | - | 1344376..1344750 (-) | 375 | WP_086042694.1 | hypothetical protein | - |
| MCCS_RS12620 (MCCS_14250) | - | 1344747..1344920 (-) | 174 | WP_157891069.1 | hypothetical protein | - |
| MCCS_RS06920 (MCCS_14270) | - | 1345005..1345208 (-) | 204 | WP_086042695.1 | hypothetical protein | - |
| MCCS_RS06930 (MCCS_14290) | - | 1345545..1345769 (-) | 225 | WP_086042697.1 | hypothetical protein | - |
| MCCS_RS06935 (MCCS_14300) | - | 1345853..1346284 (-) | 432 | WP_086042698.1 | hypothetical protein | - |
| MCCS_RS06940 (MCCS_14310) | - | 1346384..1346587 (-) | 204 | WP_086042699.1 | hypothetical protein | - |
| MCCS_RS06945 (MCCS_14320) | - | 1346578..1346976 (-) | 399 | WP_086042700.1 | YopX family protein | - |
| MCCS_RS06950 (MCCS_14330) | - | 1346973..1347245 (-) | 273 | WP_086042701.1 | hypothetical protein | - |
| MCCS_RS06955 (MCCS_14340) | - | 1347259..1347462 (-) | 204 | WP_086042702.1 | hypothetical protein | - |
| MCCS_RS06960 (MCCS_14350) | - | 1347476..1347745 (-) | 270 | WP_167625963.1 | hypothetical protein | - |
| MCCS_RS06965 (MCCS_14360) | - | 1347742..1348965 (-) | 1224 | WP_086042704.1 | DUF3310 domain-containing protein | - |
| MCCS_RS06970 (MCCS_14370) | - | 1348968..1349195 (-) | 228 | WP_086042705.1 | helix-turn-helix domain-containing protein | - |
| MCCS_RS06975 (MCCS_14380) | - | 1349198..1349590 (-) | 393 | WP_086042706.1 | hypothetical protein | - |
| MCCS_RS06980 (MCCS_14390) | - | 1349603..1349782 (-) | 180 | WP_157891070.1 | hypothetical protein | - |
| MCCS_RS06985 (MCCS_14400) | - | 1349779..1350000 (-) | 222 | WP_086042708.1 | hypothetical protein | - |
| MCCS_RS06990 (MCCS_14410) | - | 1349997..1350275 (-) | 279 | WP_086042709.1 | hypothetical protein | - |
| MCCS_RS06995 (MCCS_14420) | - | 1350288..1350650 (-) | 363 | WP_086042710.1 | YkgJ family cysteine cluster protein | - |
| MCCS_RS07000 (MCCS_14430) | ssbA | 1350663..1351169 (-) | 507 | WP_086042711.1 | single-stranded DNA-binding protein | Machinery gene |
| MCCS_RS07005 (MCCS_14440) | - | 1351162..1351683 (-) | 522 | WP_086042712.1 | HNH endonuclease | - |
| MCCS_RS07010 (MCCS_14450) | - | 1351729..1351923 (-) | 195 | WP_086042713.1 | hypothetical protein | - |
| MCCS_RS12625 (MCCS_14460) | - | 1351920..1352096 (-) | 177 | WP_157891071.1 | hypothetical protein | - |
| MCCS_RS12630 (MCCS_14470) | - | 1352068..1352244 (-) | 177 | WP_157891072.1 | hypothetical protein | - |
| MCCS_RS12635 (MCCS_14480) | - | 1352241..1352417 (-) | 177 | WP_157891073.1 | hypothetical protein | - |
| MCCS_RS07015 (MCCS_14500) | - | 1352535..1353317 (-) | 783 | WP_167625964.1 | ATP-binding protein | - |
| MCCS_RS07020 (MCCS_14510) | - | 1353298..1354176 (-) | 879 | WP_086042715.1 | phage replisome organizer N-terminal domain-containing protein | - |
| MCCS_RS07025 (MCCS_14520) | - | 1354190..1354906 (-) | 717 | WP_086042716.1 | MBL fold metallo-hydrolase | - |
| MCCS_RS07030 (MCCS_14530) | bet | 1354906..1355658 (-) | 753 | WP_086042717.1 | phage recombination protein Bet | - |
| MCCS_RS07035 (MCCS_14540) | - | 1355660..1357636 (-) | 1977 | WP_086042718.1 | AAA family ATPase | - |
| MCCS_RS07040 (MCCS_14550) | - | 1357636..1357818 (-) | 183 | WP_086042719.1 | hypothetical protein | - |
| MCCS_RS07045 (MCCS_14560) | - | 1357815..1358582 (-) | 768 | WP_086042720.1 | phage regulatory protein/antirepressor Ant | - |
| MCCS_RS07050 (MCCS_14580) | - | 1358668..1358907 (-) | 240 | WP_086042721.1 | hypothetical protein | - |
| MCCS_RS07055 (MCCS_14590) | - | 1358908..1359099 (-) | 192 | WP_086042722.1 | hypothetical protein | - |
| MCCS_RS07060 (MCCS_14600) | - | 1359101..1359346 (-) | 246 | WP_086042723.1 | hypothetical protein | - |
| MCCS_RS07065 (MCCS_14610) | - | 1359360..1359863 (-) | 504 | WP_086042724.1 | hypothetical protein | - |
| MCCS_RS07070 (MCCS_14620) | - | 1359979..1360230 (-) | 252 | WP_086042725.1 | helix-turn-helix transcriptional regulator | - |
| MCCS_RS07075 (MCCS_14630) | - | 1360384..1360725 (+) | 342 | WP_086042726.1 | helix-turn-helix transcriptional regulator | - |
| MCCS_RS12640 (MCCS_14640) | - | 1360745..1360912 (+) | 168 | WP_157891074.1 | hypothetical protein | - |
| MCCS_RS07080 (MCCS_14650) | - | 1360920..1361819 (+) | 900 | WP_157891075.1 | DUF4352 domain-containing protein | - |
| MCCS_RS12745 (MCCS_14660) | - | 1361846..1362628 (+) | 783 | WP_193432083.1 | hypothetical protein | - |
| MCCS_RS07090 (MCCS_14670) | - | 1362746..1363207 (+) | 462 | WP_086042728.1 | ImmA/IrrE family metallo-endopeptidase | - |
| MCCS_RS07095 (MCCS_14680) | - | 1363211..1364425 (+) | 1215 | WP_086042729.1 | site-specific integrase | - |
| MCCS_RS07100 | - | 1364513..1364593 (-) | 81 | WP_086042730.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| MCCS_RS07105 (MCCS_14690) | comGB | 1364765..1365655 (-) | 891 | WP_167625965.1 | competence type IV pilus assembly protein ComGB | - |
| MCCS_RS07110 (MCCS_14700) | comGA | 1365630..1366601 (-) | 972 | WP_086042732.1 | competence type IV pilus ATPase ComGA | Machinery gene |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 37257.85 Da Isoelectric Point: 6.7240
>NTDB_id=228024 MCCS_RS07110 WP_086042732.1 1365630..1366601(-) (comGA) [Macrococcoides canis strain KM 45013]
MEKLFNEIIEEAIIQGASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIHFNL
KDVRYNIRASTLPRALGDEACVLRIIRQNFIDEYQTDDKILFNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAQQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINTVDLYQSINLIINQRLVRKKDGKGRLLTYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
MEKLFNEIIEEAIIQGASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIHFNL
KDVRYNIRASTLPRALGDEACVLRIIRQNFIDEYQTDDKILFNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAQQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINTVDLYQSINLIINQRLVRKKDGKGRLLTYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
Nucleotide
Download Length: 972 bp
>NTDB_id=228024 MCCS_RS07110 WP_086042732.1 1365630..1366601(-) (comGA) [Macrococcoides canis strain KM 45013]
ATGGAAAAATTATTCAATGAAATAATAGAGGAAGCAATTATACAAGGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACGGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCATTTTAATCTG
AAAGACGTAAGATATAATATTCGCGCATCTACTTTACCTCGAGCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGGATGACAAGATATTGTTCAATCAAATAAAAAAATCAAGCGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAAGTTAATGTTAACGAAAAAGCAGAGATAAC
ATATCATACCGCGATAAAGGCAATCCTTAGATGTGATCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTAG
CACAGCAAGTGATCAATGCAGGACTAAGCGGTCATCTCGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATACTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAGAGGCTTGTAAG
AAAGAAAGATGGGAAGGGGCGTCTATTGACCTATGAATTTTTGACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
ATGGAAAAATTATTCAATGAAATAATAGAGGAAGCAATTATACAAGGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACGGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCATTTTAATCTG
AAAGACGTAAGATATAATATTCGCGCATCTACTTTACCTCGAGCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGGATGACAAGATATTGTTCAATCAAATAAAAAAATCAAGCGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAAGTTAATGTTAACGAAAAAGCAGAGATAAC
ATATCATACCGCGATAAAGGCAATCCTTAGATGTGATCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTAG
CACAGCAAGTGATCAATGCAGGACTAAGCGGTCATCTCGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATACTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAGAGGCTTGTAAG
AAAGAAAGATGGGAAGGGGCGTCTATTGACCTATGAATTTTTGACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
48.78 |
100 |
0.495 |
| comGA | Staphylococcus aureus N315 |
48.78 |
100 |
0.495 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
38.037 |
100 |
0.384 |
| pilB | Glaesserella parasuis strain SC1401 |
34.012 |
100 |
0.362 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
34.513 |
100 |
0.362 |