Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MCCS_RS06705 Genome accession   NZ_CP021059
Coordinates   1312494..1312787 (-) Length   97 a.a.
NCBI ID   WP_086042652.1    Uniprot ID   A0A1W7ABR1
Organism   Macrococcoides canis strain KM 45013     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1307494..1317787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCCS_RS06680 (MCCS_13730) gcvPA 1308204..1309547 (-) 1344 WP_086042648.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MCCS_RS06685 (MCCS_13740) gcvT 1309560..1310645 (-) 1086 WP_086043664.1 glycine cleavage system aminomethyltransferase GcvT -
  MCCS_RS06690 (MCCS_13760) - 1310783..1311289 (-) 507 WP_086042649.1 shikimate kinase -
  MCCS_RS06695 (MCCS_13770) - 1311450..1311902 (-) 453 WP_086042650.1 competence type IV pilus minor pilin ComGF -
  MCCS_RS12710 (MCCS_13780) - 1311847..1312089 (-) 243 WP_133418987.1 hypothetical protein -
  MCCS_RS06700 (MCCS_13790) comGD 1312076..1312501 (-) 426 WP_167625962.1 competence type IV pilus minor pilin ComGD -
  MCCS_RS06705 (MCCS_13800) comGC 1312494..1312787 (-) 294 WP_086042652.1 competence type IV pilus major pilin ComGC Machinery gene
  MCCS_RS06710 (MCCS_13810) - 1313028..1313285 (+) 258 WP_086042653.1 hypothetical protein -
  MCCS_RS06715 (MCCS_13820) - 1313260..1313691 (+) 432 WP_086042654.1 YolD-like family protein -
  MCCS_RS06720 (MCCS_13830) - 1313847..1314068 (+) 222 WP_086042655.1 hypothetical protein -
  MCCS_RS06725 (MCCS_13840) - 1314065..1314769 (+) 705 WP_086042656.1 hypothetical protein -
  MCCS_RS06730 (MCCS_13850) - 1314848..1315255 (-) 408 WP_086042657.1 hypothetical protein -
  MCCS_RS06735 (MCCS_13860) - 1315419..1316246 (-) 828 WP_086042658.1 SH3 domain-containing protein -
  MCCS_RS06740 (MCCS_13870) - 1316248..1316514 (-) 267 WP_086042659.1 phage holin -
  MCCS_RS06745 (MCCS_13880) - 1316560..1316946 (-) 387 WP_086042660.1 hypothetical protein -
  MCCS_RS12610 - 1317177..1317398 (+) 222 WP_157891064.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10608.61 Da        Isoelectric Point: 4.9998

>NTDB_id=228022 MCCS_RS06705 WP_086042652.1 1312494..1312787(-) (comGC) [Macrococcoides canis strain KM 45013]
MMKLITLIEMLLVLLVISILIIVIIPNIAKQSKTVQAKGCEAQVRMVQGQIEAYRLEKGNTPSTVNELVPDYLQENQVKC
KDGTDIIINDGVASIGA

Nucleotide


Download         Length: 294 bp        

>NTDB_id=228022 MCCS_RS06705 WP_086042652.1 1312494..1312787(-) (comGC) [Macrococcoides canis strain KM 45013]
ATGATGAAATTGATAACGTTAATTGAAATGTTATTAGTATTACTCGTTATTTCAATATTAATCATCGTGATCATTCCGAA
TATCGCTAAACAGTCTAAGACTGTACAGGCTAAAGGGTGTGAAGCTCAAGTAAGGATGGTGCAAGGTCAGATTGAAGCAT
ACCGACTTGAAAAAGGGAATACACCTTCAACAGTTAATGAACTTGTTCCTGATTATTTACAAGAAAATCAGGTGAAATGT
AAGGACGGAACGGACATCATAATTAATGATGGAGTGGCATCAATTGGTGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7ABR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

54.444

92.784

0.505
  comGC Staphylococcus aureus N315

54.444

92.784

0.505
  comGC Bacillus subtilis subsp. subtilis str. 168

43.333

92.784

0.402
  comYC Streptococcus mutans UA140

42.169

85.567

0.361
  comYC Streptococcus mutans UA159

42.169

85.567

0.361

Multiple sequence alignment