Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CA207_RS05435 | Genome accession | NZ_CP021058 |
| Coordinates | 1067511..1067993 (+) | Length | 160 a.a. |
| NCBI ID | WP_086038608.1 | Uniprot ID | - |
| Organism | Macrococcoides caseolyticum strain IMD0819 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1059757..1098228 | 1067511..1067993 | within | 0 |
Gene organization within MGE regions
Location: 1059757..1098228
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA207_RS05355 (CA207_11070) | - | 1059757..1060923 (-) | 1167 | WP_086038599.1 | tyrosine-type recombinase/integrase | - |
| CA207_RS05360 (CA207_11080) | - | 1060993..1061619 (-) | 627 | WP_157820203.1 | DUF4352 domain-containing protein | - |
| CA207_RS05365 (CA207_11090) | - | 1061679..1062164 (-) | 486 | WP_086038601.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CA207_RS05370 (CA207_11100) | - | 1062177..1062602 (-) | 426 | WP_232755764.1 | helix-turn-helix domain-containing protein | - |
| CA207_RS05375 (CA207_11110) | - | 1062690..1062899 (+) | 210 | WP_086038309.1 | helix-turn-helix domain-containing protein | - |
| CA207_RS05380 (CA207_11120) | - | 1062943..1063212 (+) | 270 | WP_086038310.1 | hypothetical protein | - |
| CA207_RS05385 (CA207_11130) | - | 1063209..1063397 (+) | 189 | WP_086038311.1 | hypothetical protein | - |
| CA207_RS05390 (CA207_11150) | - | 1063490..1064242 (+) | 753 | WP_162485202.1 | BRO family protein | - |
| CA207_RS05395 (CA207_11160) | - | 1064232..1064504 (+) | 273 | WP_086038313.1 | hypothetical protein | - |
| CA207_RS05400 (CA207_11170) | - | 1064485..1065492 (+) | 1008 | WP_086038602.1 | DnaD domain protein | - |
| CA207_RS05405 (CA207_11180) | - | 1065473..1065787 (+) | 315 | WP_162485204.1 | hypothetical protein | - |
| CA207_RS05410 (CA207_11190) | - | 1065789..1065980 (+) | 192 | WP_086038603.1 | hypothetical protein | - |
| CA207_RS05415 (CA207_11200) | - | 1065955..1066155 (-) | 201 | WP_086038604.1 | hypothetical protein | - |
| CA207_RS05420 (CA207_11220) | - | 1066337..1066537 (-) | 201 | WP_086038605.1 | hypothetical protein | - |
| CA207_RS05425 (CA207_11230) | - | 1066629..1066958 (+) | 330 | WP_086038606.1 | hypothetical protein | - |
| CA207_RS05430 (CA207_11240) | - | 1066997..1067518 (+) | 522 | WP_086038607.1 | HNH endonuclease | - |
| CA207_RS05435 (CA207_11250) | ssbA | 1067511..1067993 (+) | 483 | WP_086038608.1 | single-stranded DNA-binding protein | Machinery gene |
| CA207_RS05440 (CA207_11260) | - | 1068007..1068348 (+) | 342 | WP_086038609.1 | hypothetical protein | - |
| CA207_RS05445 (CA207_11270) | - | 1068359..1068607 (+) | 249 | WP_086038610.1 | hypothetical protein | - |
| CA207_RS05450 (CA207_11280) | - | 1068620..1068862 (+) | 243 | WP_086038611.1 | hypothetical protein | - |
| CA207_RS05455 (CA207_11290) | - | 1068876..1069409 (+) | 534 | WP_086038612.1 | MazG-like family protein | - |
| CA207_RS05460 (CA207_11310) | - | 1069604..1070116 (+) | 513 | WP_086038613.1 | Holliday junction resolvase RecU | - |
| CA207_RS12155 (CA207_11320) | - | 1070127..1070279 (+) | 153 | WP_157819807.1 | hypothetical protein | - |
| CA207_RS05465 (CA207_11330) | - | 1070477..1070926 (+) | 450 | WP_086038614.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| CA207_RS05470 (CA207_11340) | - | 1070926..1071474 (+) | 549 | WP_086038615.1 | site-specific integrase | - |
| CA207_RS05475 (CA207_11350) | - | 1071683..1072123 (+) | 441 | WP_086038616.1 | hypothetical protein | - |
| CA207_RS05480 (CA207_11360) | - | 1072252..1072629 (+) | 378 | WP_235606501.1 | HNH endonuclease signature motif containing protein | - |
| CA207_RS05485 (CA207_11370) | - | 1072762..1073247 (+) | 486 | WP_012657433.1 | phage terminase small subunit P27 family | - |
| CA207_RS05490 (CA207_11380) | - | 1073244..1074950 (+) | 1707 | WP_086038617.1 | terminase large subunit | - |
| CA207_RS12160 (CA207_11390) | - | 1074947..1075120 (+) | 174 | WP_157827310.1 | hypothetical protein | - |
| CA207_RS05495 (CA207_11400) | - | 1075202..1076365 (+) | 1164 | WP_162485211.1 | phage portal protein | - |
| CA207_RS05500 (CA207_11410) | - | 1076349..1076918 (+) | 570 | WP_041636125.1 | HK97 family phage prohead protease | - |
| CA207_RS05505 (CA207_11420) | - | 1076928..1078061 (+) | 1134 | WP_086038619.1 | phage major capsid protein | - |
| CA207_RS05510 (CA207_11430) | - | 1078076..1078282 (+) | 207 | WP_086038620.1 | hypothetical protein | - |
| CA207_RS05515 (CA207_11440) | - | 1078263..1078598 (+) | 336 | WP_041636122.1 | head-tail connector protein | - |
| CA207_RS05520 (CA207_11450) | - | 1078567..1078890 (+) | 324 | WP_012657427.1 | head-tail adaptor protein | - |
| CA207_RS05525 (CA207_11460) | - | 1078887..1079279 (+) | 393 | WP_012657426.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| CA207_RS05530 (CA207_11470) | - | 1079276..1079665 (+) | 390 | WP_086038621.1 | hypothetical protein | - |
| CA207_RS05535 (CA207_11480) | - | 1079678..1080265 (+) | 588 | WP_012657424.1 | major tail protein | - |
| CA207_RS05540 (CA207_11490) | gpG | 1080336..1080689 (+) | 354 | WP_012657423.1 | phage tail assembly chaperone G | - |
| CA207_RS12165 (CA207_11500) | - | 1080749..1080898 (+) | 150 | WP_158298083.1 | hypothetical protein | - |
| CA207_RS05545 (CA207_11510) | - | 1080923..1085284 (+) | 4362 | WP_086038622.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| CA207_RS05550 (CA207_11520) | - | 1085294..1086814 (+) | 1521 | WP_086038623.1 | phage distal tail protein | - |
| CA207_RS05555 (CA207_11530) | - | 1086830..1090174 (+) | 3345 | WP_086038624.1 | phage tail spike protein | - |
| CA207_RS05560 (CA207_11540) | - | 1090176..1090574 (+) | 399 | WP_086038625.1 | hypothetical protein | - |
| CA207_RS12170 (CA207_11550) | - | 1090558..1090728 (+) | 171 | WP_157820106.1 | hypothetical protein | - |
| CA207_RS05565 (CA207_11560) | - | 1090773..1091060 (+) | 288 | WP_086038626.1 | hypothetical protein | - |
| CA207_RS05570 (CA207_11570) | - | 1091075..1091587 (+) | 513 | WP_086038627.1 | holin family protein | - |
| CA207_RS05575 (CA207_11580) | - | 1091645..1092469 (+) | 825 | WP_235606505.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CA207_RS05580 (CA207_11590) | - | 1092704..1093000 (+) | 297 | WP_086038628.1 | hypothetical protein | - |
| CA207_RS05585 (CA207_11600) | - | 1092990..1093391 (+) | 402 | WP_086038629.1 | hypothetical protein | - |
| CA207_RS05590 (CA207_11610) | - | 1093354..1093605 (+) | 252 | WP_086038630.1 | hypothetical protein | - |
| CA207_RS05595 (CA207_11620) | - | 1094043..1095002 (+) | 960 | WP_086037795.1 | IS30 family transposase | - |
| CA207_RS05600 (CA207_11630) | - | 1095036..1095461 (+) | 426 | WP_086038631.1 | hypothetical protein | - |
| CA207_RS05605 (CA207_11640) | - | 1095932..1096321 (-) | 390 | WP_086038632.1 | hypothetical protein | - |
| CA207_RS05610 (CA207_11650) | - | 1096589..1097092 (+) | 504 | WP_086038633.1 | hypothetical protein | - |
| CA207_RS05615 (CA207_11660) | - | 1097269..1098228 (+) | 960 | WP_086037795.1 | IS30 family transposase | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17966.81 Da Isoelectric Point: 4.9587
>NTDB_id=227988 CA207_RS05435 WP_086038608.1 1067511..1067993(+) (ssbA) [Macrococcoides caseolyticum strain IMD0819]
MINRVVLVGRLTADPQYRVTPSGVSVATFTLAINRTFTNAQGERQADFINCIVFRKQAENVNTYLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCESVQFLEPKNSRNGADHYDDYPQAQQTNDYATREKKAQETMPTNNPFANADGPIDISDDDLPF
MINRVVLVGRLTADPQYRVTPSGVSVATFTLAINRTFTNAQGERQADFINCIVFRKQAENVNTYLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCESVQFLEPKNSRNGADHYDDYPQAQQTNDYATREKKAQETMPTNNPFANADGPIDISDDDLPF
Nucleotide
Download Length: 483 bp
>NTDB_id=227988 CA207_RS05435 WP_086038608.1 1067511..1067993(+) (ssbA) [Macrococcoides caseolyticum strain IMD0819]
ATGATTAATCGAGTTGTGCTTGTAGGAAGGCTTACGGCTGATCCACAATATCGCGTAACACCATCAGGAGTTTCGGTAGC
AACCTTTACACTTGCAATCAATCGTACATTCACTAATGCACAAGGCGAGCGACAAGCAGACTTTATAAACTGCATCGTAT
TCAGAAAGCAAGCAGAAAACGTAAATACTTATCTACACAAAGGAAGTTTAGCTGGAGTCGATGGAAGATTACAATCACGT
AGCTATGACAATCAAGAAGGTAGACGAGTATATGTAACTGAAGTTGTATGTGAATCAGTTCAATTCCTAGAACCGAAGAA
TTCAAGAAATGGTGCAGATCACTATGATGATTATCCGCAAGCTCAGCAAACTAACGATTATGCAACTCGTGAGAAAAAGG
CACAAGAAACAATGCCTACTAATAATCCATTTGCTAATGCCGATGGGCCAATAGATATTAGTGATGATGATTTACCGTTT
TAA
ATGATTAATCGAGTTGTGCTTGTAGGAAGGCTTACGGCTGATCCACAATATCGCGTAACACCATCAGGAGTTTCGGTAGC
AACCTTTACACTTGCAATCAATCGTACATTCACTAATGCACAAGGCGAGCGACAAGCAGACTTTATAAACTGCATCGTAT
TCAGAAAGCAAGCAGAAAACGTAAATACTTATCTACACAAAGGAAGTTTAGCTGGAGTCGATGGAAGATTACAATCACGT
AGCTATGACAATCAAGAAGGTAGACGAGTATATGTAACTGAAGTTGTATGTGAATCAGTTCAATTCCTAGAACCGAAGAA
TTCAAGAAATGGTGCAGATCACTATGATGATTATCCGCAAGCTCAGCAAACTAACGATTATGCAACTCGTGAGAAAAAGG
CACAAGAAACAATGCCTACTAATAATCCATTTGCTAATGCCGATGGGCCAATAGATATTAGTGATGATGATTTACCGTTT
TAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.977 |
100 |
0.613 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.544 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.752 |
70.625 |
0.394 |