Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B6257_RS10200 Genome accession   NZ_CP021011
Coordinates   1977255..1977545 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain GFP-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1972255..1982545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS10160 (B6257_10095) darA 1972273..1972602 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  B6257_RS10165 (B6257_10100) - 1972615..1973055 (+) 441 WP_004264730.1 YaaR family protein -
  B6257_RS10170 (B6257_10105) holB 1973067..1974056 (+) 990 WP_029974650.1 DNA polymerase III subunit delta' -
  B6257_RS10175 (B6257_10110) ricT 1974059..1974886 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  B6257_RS10180 (B6257_10115) yabA 1974901..1975260 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  B6257_RS10185 (B6257_10120) - 1975320..1976063 (+) 744 WP_029974652.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  B6257_RS10190 (B6257_10125) - 1976050..1976349 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  B6257_RS10195 (B6257_10130) rsmI 1976324..1977205 (+) 882 WP_101562627.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B6257_RS10200 (B6257_10135) abrB 1977255..1977545 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  B6257_RS10205 (B6257_10140) metG 1978028..1980019 (+) 1992 WP_101562628.1 methionine--tRNA ligase -
  B6257_RS10210 (B6257_10145) - 1980095..1980862 (+) 768 WP_032868379.1 TatD family hydrolase -
  B6257_RS10215 (B6257_10150) - 1980997..1982322 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=227816 B6257_RS10200 WP_169510469.1 1977255..1977545(-) (abrB) [Bacillus velezensis strain GFP-2]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=227816 B6257_RS10200 WP_169510469.1 1977255..1977545(-) (abrB) [Bacillus velezensis strain GFP-2]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGTAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment