Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   B6257_RS07230 Genome accession   NZ_CP021011
Coordinates   1381114..1381803 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain GFP-2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1376114..1386803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS07195 (B6257_07160) - 1376312..1376794 (-) 483 WP_003151394.1 flagellar protein FlgN -
  B6257_RS07200 (B6257_07165) flgM 1376809..1377075 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  B6257_RS07205 (B6257_07170) - 1377145..1377564 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  B6257_RS07210 (B6257_07175) comFC 1377638..1378327 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  B6257_RS07215 (B6257_07180) - 1378333..1378617 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  B6257_RS07220 (B6257_07185) comFA 1378675..1380060 (-) 1386 WP_101562487.1 DEAD/DEAH box helicase Machinery gene
  B6257_RS07225 (B6257_07190) - 1380168..1381016 (-) 849 WP_101562488.1 DegV family protein -
  B6257_RS07230 (B6257_07195) degU 1381114..1381803 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B6257_RS07235 (B6257_07200) degS 1381880..1383043 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  B6257_RS07240 (B6257_07205) - 1383266..1383913 (+) 648 WP_060657503.1 YigZ family protein -
  B6257_RS07245 (B6257_07210) - 1383918..1385132 (+) 1215 WP_101562489.1 LCP family protein -
  B6257_RS07250 (B6257_07215) - 1385222..1386298 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=227804 B6257_RS07230 WP_003219701.1 1381114..1381803(-) (degU) [Bacillus velezensis strain GFP-2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=227804 B6257_RS07230 WP_003219701.1 1381114..1381803(-) (degU) [Bacillus velezensis strain GFP-2]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment