Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   FORC82_RS03530 Genome accession   NZ_CP026641
Coordinates   722327..722986 (-) Length   219 a.a.
NCBI ID   WP_096969484.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_082     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 717327..727986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC82_RS03505 yqiA 717396..717976 (+) 581 Protein_677 esterase YqiA -
  FORC82_RS03510 (FORC82_0730) parE 718005..719897 (+) 1893 WP_129501456.1 DNA topoisomerase IV subunit B -
  FORC82_RS03515 (FORC82_0731) ygiN 719945..720259 (-) 315 WP_000958598.1 putative quinol monooxygenase -
  FORC82_RS03520 (FORC82_0732) mdaB 720290..720871 (-) 582 WP_096969482.1 NADPH:quinone oxidoreductase MdaB -
  FORC82_RS03525 (FORC82_0733) qseC 720981..722330 (-) 1350 WP_096969483.1 quorum sensing histidine kinase QseC -
  FORC82_RS03530 (FORC82_0734) ciaR 722327..722986 (-) 660 WP_096969484.1 quorum sensing response regulator transcription factor QseB Regulator
  FORC82_RS03535 (FORC82_0735) ygiW 723138..723530 (+) 393 WP_096969485.1 OB fold stress tolerance protein YgiW -
  FORC82_RS03540 (FORC82_0736) ygiV 723583..724065 (+) 483 WP_000183504.1 GyrI-like domain-containing protein -
  FORC82_RS03545 (FORC82_0737) parC 724611..726869 (+) 2259 WP_001281881.1 DNA topoisomerase IV subunit A -
  FORC82_RS03550 (FORC82_0738) plsC 727102..727839 (+) 738 WP_000965711.1 1-acylglycerol-3-phosphate O-acyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24699.68 Da        Isoelectric Point: 6.9850

>NTDB_id=227615 FORC82_RS03530 WP_096969484.1 722327..722986(-) (ciaR) [Escherichia coli strain FORC_082]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLILKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=227615 FORC82_RS03530 WP_096969484.1 722327..722986(-) (ciaR) [Escherichia coli strain FORC_082]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTATATAGCGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTATTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAACTGCGCCACGGTAATGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAATACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGGCGCAAACTCGGCAGTGATTTTATTCGTACCGTTCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365

Multiple sequence alignment