Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FORC82_RS01920 Genome accession   NZ_CP026641
Coordinates   417758..418390 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain FORC_082     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 412758..423390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC82_RS01895 (FORC82_0400) yhfG 412890..413057 (+) 168 WP_000736861.1 YhfG family protein -
  FORC82_RS01900 (FORC82_0401) fic 413047..413649 (+) 603 WP_000502521.1 putative adenosine monophosphate-protein transferase Fic -
  FORC82_RS01905 (FORC82_0402) pabA 413681..414244 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  FORC82_RS01910 (FORC82_0403) argD 414330..415550 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FORC82_RS01915 (FORC82_0404) yhfK 415617..417707 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  FORC82_RS01920 (FORC82_0405) crp 417758..418390 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FORC82_RS01925 (FORC82_0406) yhfA 418692..419096 (+) 405 WP_001148908.1 OsmC family protein -
  FORC82_RS01930 (FORC82_0407) prkB 419151..420020 (-) 870 WP_001274680.1 phosphoribulokinase -
  FORC82_RS01935 (FORC82_0408) yheU 420074..420292 (-) 219 WP_000907085.1 YheU family protein -
  FORC82_RS01940 (FORC82_0410) yheT 420286..421307 (-) 1022 Protein_375 hydrolase -
  FORC82_RS01945 (FORC82_0411) yheS 421307..423220 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=227609 FORC82_RS01920 WP_000242755.1 417758..418390(-) (crp) [Escherichia coli strain FORC_082]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=227609 FORC82_RS01920 WP_000242755.1 417758..418390(-) (crp) [Escherichia coli strain FORC_082]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment