Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   B9W14_RS02585 Genome accession   NZ_CP020953
Coordinates   600532..601239 (-) Length   235 a.a.
NCBI ID   WP_032078952.1    Uniprot ID   -
Organism   Clostridium drakei strain SL1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 592884..609440 600532..601239 within 0


Gene organization within MGE regions


Location: 592884..609440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9W14_RS02545 (B9W14_02545) - 592902..593474 (+) 573 WP_242859903.1 flavodoxin family protein -
  B9W14_RS02550 (B9W14_02550) - 593438..593875 (+) 438 Protein_489 alpha/beta fold hydrolase -
  B9W14_RS02555 (B9W14_02555) - 594045..595016 (-) 972 WP_032078948.1 choloylglycine hydrolase family protein -
  B9W14_RS02560 (B9W14_02560) - 595589..596026 (+) 438 WP_052038022.1 MarR family transcriptional regulator -
  B9W14_RS02565 (B9W14_02565) - 596039..597268 (+) 1230 WP_032078949.1 multidrug effflux MFS transporter -
  B9W14_RS02570 (B9W14_02570) - 597407..597574 (+) 168 WP_242859893.1 nucleotidyltransferase domain-containing protein -
  B9W14_RS02575 (B9W14_02575) - 597841..598665 (+) 825 WP_032078950.1 4Fe-4S binding protein -
  B9W14_RS02580 (B9W14_02580) - 599152..600531 (-) 1380 WP_032078951.1 HAMP domain-containing sensor histidine kinase -
  B9W14_RS02585 (B9W14_02585) scnR 600532..601239 (-) 708 WP_032078952.1 response regulator transcription factor Regulator
  B9W14_RS02590 (B9W14_02590) - 601429..602337 (+) 909 WP_032079070.1 ABC transporter ATP-binding protein -
  B9W14_RS02595 (B9W14_02595) - 602337..603086 (+) 750 WP_032078953.1 ABC transporter permease -
  B9W14_RS02600 (B9W14_02600) - 603098..603841 (+) 744 WP_032078954.1 ABC transporter permease -
  B9W14_RS02605 (B9W14_02605) - 603870..604148 (+) 279 WP_032078955.1 hypothetical protein -
  B9W14_RS02615 (B9W14_02610) - 604935..605630 (+) 696 WP_032078956.1 response regulator transcription factor -
  B9W14_RS02620 (B9W14_02615) - 605634..606557 (+) 924 WP_032078957.1 HAMP domain-containing sensor histidine kinase -
  B9W14_RS02625 (B9W14_02620) - 606682..607605 (+) 924 WP_032078958.1 ABC transporter ATP-binding protein -
  B9W14_RS02630 (B9W14_02625) - 607589..608371 (+) 783 WP_032078959.1 ABC transporter permease -
  B9W14_RS02635 (B9W14_02630) - 608390..609202 (+) 813 WP_032078960.1 ABC transporter permease -
  B9W14_RS26235 - 609237..609440 (+) 204 WP_032078961.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26631.87 Da        Isoelectric Point: 4.6853

>NTDB_id=227334 B9W14_RS02585 WP_032078952.1 600532..601239(-) (scnR) [Clostridium drakei strain SL1]
MEYNYYKNKKILIVDDEPDLLELVSSTLKEDGYLNVDIASTVKEARKKLKDNPPDAAVLDVMLPDGNGFDLCNEIMKVRD
IPILFLTARGEAEDRFQGLGMGADDYITKPFFPKELTLRLSAVLRRCYKEDDPMVLIESGEIDFTKAIVIKEGEEIPLTA
KECAILDILYRNAGRIVTIDTLCQAVWGDNYFGYESALMAHIRRIREKIEMNPSSPVTLLTVKGLGYRLIMKEGR

Nucleotide


Download         Length: 708 bp        

>NTDB_id=227334 B9W14_RS02585 WP_032078952.1 600532..601239(-) (scnR) [Clostridium drakei strain SL1]
ATGGAATATAATTATTATAAAAATAAGAAAATATTGATTGTAGATGACGAACCTGACTTGTTGGAGTTAGTATCCTCCAC
CTTAAAAGAAGATGGCTATCTTAATGTTGATATAGCATCTACCGTTAAAGAGGCTCGTAAAAAACTAAAGGACAATCCTC
CAGATGCAGCAGTACTTGATGTAATGCTCCCAGATGGAAATGGCTTTGATCTCTGTAATGAAATTATGAAGGTGAGGGAC
ATCCCAATTCTATTCCTGACAGCCCGTGGAGAAGCTGAGGATCGATTTCAGGGTCTTGGCATGGGTGCCGACGATTACAT
CACAAAGCCGTTTTTTCCAAAAGAATTGACGCTGAGGCTATCTGCTGTTTTACGGCGTTGTTACAAAGAAGATGATCCTA
TGGTTCTGATTGAGTCCGGTGAGATTGATTTTACAAAGGCTATTGTTATTAAAGAAGGTGAAGAAATCCCACTGACAGCC
AAAGAATGTGCAATTCTGGATATACTGTACCGCAATGCAGGCCGAATCGTCACTATTGATACATTGTGTCAAGCAGTCTG
GGGTGACAATTATTTTGGCTATGAAAGTGCACTAATGGCTCATATTCGTCGCATTCGTGAGAAGATTGAAATGAATCCCT
CTTCTCCAGTGACGCTTCTGACTGTTAAGGGGCTTGGTTATAGGCTAATTATGAAAGAAGGAAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.339

95.319

0.489
  micA Streptococcus pneumoniae Cp1015

37.281

97.021

0.362
  vicR Streptococcus mutans UA159

37.118

97.447

0.362

Multiple sequence alignment