Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSPTO_RS19935 Genome accession   NC_004578
Coordinates   4354331..4355047 (-) Length   238 a.a.
NCBI ID   WP_007245835.1    Uniprot ID   A0A2G7MEY6
Organism   Pseudomonas syringae pv. tomato str. DC3000     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4349331..4360047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSPTO_RS19910 (PSPTO3842) murB 4350890..4351909 (-) 1020 WP_005770641.1 UDP-N-acetylmuramate dehydrogenase -
  PSPTO_RS19915 (PSPTO3843) kdsB 4351944..4352708 (-) 765 WP_005770642.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSPTO_RS19920 (PSPTO3844) - 4352705..4352890 (-) 186 WP_003381112.1 Trm112 family protein -
  PSPTO_RS19925 (PSPTO3845) lpxK 4352908..4353903 (-) 996 WP_005770644.1 tetraacyldisaccharide 4'-kinase -
  PSPTO_RS19930 (PSPTO3846) - 4353903..4354334 (-) 432 WP_005770645.1 ExbD/TolR family protein -
  PSPTO_RS19935 (PSPTO3847) exbB 4354331..4355047 (-) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSPTO_RS19940 (PSPTO3848) comA 4355091..4357307 (-) 2217 WP_011104749.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSPTO_RS19945 (PSPTO3849) - 4357545..4359572 (+) 2028 WP_005770647.1 type VI secretion system tip protein VgrG -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25863.42 Da        Isoelectric Point: 7.9105

>NTDB_id=22728 PSPTO_RS19935 WP_007245835.1 4354331..4355047(-) (exbB) [Pseudomonas syringae pv. tomato str. DC3000]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLANSKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=22728 PSPTO_RS19935 WP_007245835.1 4354331..4355047(-) (exbB) [Pseudomonas syringae pv. tomato str. DC3000]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCC
GATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGC
CGCACCTGCTGGGTCAGGCGTGGCAGTGGATTCAGGAAAAGAAACTCGATAACGAAAAGCTCAAGCAGTTGCGCGCCGAC
TCGCCGCTGGGCGAAATCCTTGCCGCTGGCCTGGCCAATTCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGA
AGCCGCCGCCCGTGTCATCCATGACCTGGAGCGCTACCTGAGCGCGCTGGGCTCTATCGCCGCGATGGCCCCGTTGCTCG
GTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCGGTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTG
CTGGCAAGCGGTATCTCCAAGGCACTGATCTGTACCGCATCGGGCCTTATCGTCGCGATCCCGGCGATCTTCTTTCACCG
CTTTCTGCAAAGCCGTGTCGATGAACTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAAATCGACCTCAAGTCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7MEY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693

Multiple sequence alignment