Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSPTO_RS19940 Genome accession   NC_004578
Coordinates   4355091..4357307 (-) Length   738 a.a.
NCBI ID   WP_011104749.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. tomato str. DC3000     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4350091..4362307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSPTO_RS19910 (PSPTO3842) murB 4350890..4351909 (-) 1020 WP_005770641.1 UDP-N-acetylmuramate dehydrogenase -
  PSPTO_RS19915 (PSPTO3843) kdsB 4351944..4352708 (-) 765 WP_005770642.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSPTO_RS19920 (PSPTO3844) - 4352705..4352890 (-) 186 WP_003381112.1 Trm112 family protein -
  PSPTO_RS19925 (PSPTO3845) lpxK 4352908..4353903 (-) 996 WP_005770644.1 tetraacyldisaccharide 4'-kinase -
  PSPTO_RS19930 (PSPTO3846) - 4353903..4354334 (-) 432 WP_005770645.1 ExbD/TolR family protein -
  PSPTO_RS19935 (PSPTO3847) exbB 4354331..4355047 (-) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSPTO_RS19940 (PSPTO3848) comA 4355091..4357307 (-) 2217 WP_011104749.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSPTO_RS19945 (PSPTO3849) - 4357545..4359572 (+) 2028 WP_005770647.1 type VI secretion system tip protein VgrG -
  PSPTO_RS19950 (PSPTO3850) - 4359569..4360420 (+) 852 WP_011104750.1 DUF4123 domain-containing protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80591.97 Da        Isoelectric Point: 10.4494

>NTDB_id=22729 PSPTO_RS19940 WP_011104749.1 4355091..4357307(-) (comA) [Pseudomonas syringae pv. tomato str. DC3000]
MRSGMIALALGLVALRFLPVLPPIWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALKDRLQQRLDGQTLWLQG
KVAGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLISFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGSWSWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPVPVVGEGLLWLAGGALQWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELTRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPNGNAGSCMLSVDAGGERLLLTGDIDVHAE
CAAMDSGFDLRAHWLQAPHHGSRSSSSKVFLQAVAPLGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=22729 PSPTO_RS19940 WP_011104749.1 4355091..4357307(-) (comA) [Pseudomonas syringae pv. tomato str. DC3000]
ATGCGCTCAGGGATGATCGCGCTCGCGTTGGGGCTGGTGGCCCTGCGCTTTCTGCCGGTTTTGCCGCCGATCTGGCTCTT
GTTGCTAATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGCTTCACGT
GGGCGTGCGTTTCGGCGCAGTGGGCGTTGAAAGACCGTTTGCAGCAACGGCTGGACGGCCAGACACTGTGGCTGCAAGGC
AAAGTGGCCGGTTTGCCGAGCGTTGCCGAGGGCGTGGTGCGTTTCGAGCTGGAACACGCCACGTCGCGGCGGGCGAAGCT
GCCTGCGCTGATCCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGCTGGCGACTGGCGGTAAAGCTCA
AGCGCCCCGGCGGGCTGGTCAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCACAGCGCATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGCTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGCGGTTGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGTCAGCATATCGGCTTGCTTGCTGGCGTGATTTACGCGTTG
GTCGCAGGTCTCGCCCGCTGGGGACTGTGGCCACGGGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCGTTCATTGC
TGCGCTGGGCTACGGATTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTATTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTTTTGATTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTACTGATTTTCAGTGGCCGTCTGGGTAG
CTGGAGCTGGTGGCAGAGCTGGACGCGCGCGCAGTGGCTGATCGCAATCGGCTTGTTGCCGATTTTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTCGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCACTG
ATCGGCACGTTGCTGCTGCCGGTCCCCGTTGTTGGCGAGGGCCTGCTCTGGCTGGCGGGAGGCGCGCTGCAATGGCTGTT
CGTGTTTCTCGGTTGGGTGGCCGAGGCCTTGCCCGCCTGGCTGCCCAGTGCGGTGCCTGGCTGGGCATGGCTGTTGAGTC
TGCTCGGGGCCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGCTGGCCATTGTTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCTGTGCCGATGGGGCAGGTCGAGGTGTTGCAACTGGACGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACACTGCTCTACGATGCAGGGCCGCGTTTCGGTGAGTTCGATATCGGCCAACGGGTGGTCGTGC
CGGCGATGCGCAAGTCCGGTGTTCGTCACTTGGATCTGATGCTGATCAGCCATGCCGATGCGGATCATGCCGGCGGGGCG
GCAGCGGTTCATCGGGCATTTCCGGTGAACCGCGTGCTGGGCGGGGAACTGACCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCAACGGTA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCCGGTGGTGAGCGTCTGCTGCTGACGGGCGACATTGATGTGCACGCCGAG
TGTGCGGCAATGGACAGCGGTTTTGACCTTCGTGCCCACTGGTTGCAGGCTCCGCATCACGGCAGCCGCAGTTCATCCTC
CAAAGTGTTTCTGCAGGCGGTTGCGCCGCTGGGCGTGCTCATTTCCCGCGGGCAGAACAATGCCTTCGGTCATCCGCATC
CGTTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTAGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAGCGGGCTCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.827

97.019

0.619
  comA Ralstonia pseudosolanacearum GMI1000

32.619

100

0.371

Multiple sequence alignment