Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   C3K23_RS09040 Genome accession   NZ_CP026490
Coordinates   1938020..1939093 (+) Length   357 a.a.
NCBI ID   WP_164180527.1    Uniprot ID   -
Organism   Streptomyces sp. 604F     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1933020..1944093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K23_RS09030 (C3K23_09150) - 1934525..1935787 (+) 1263 WP_023422842.1 NAD(P)/FAD-dependent oxidoreductase -
  C3K23_RS09035 (C3K23_09155) dnaG 1935908..1937812 (+) 1905 WP_033948508.1 DNA primase -
  C3K23_RS09040 (C3K23_09160) rpoS 1938020..1939093 (+) 1074 WP_164180527.1 RNA polymerase sigma factor Regulator
  C3K23_RS09045 (C3K23_09165) - 1939110..1939325 (-) 216 WP_033948506.1 hypothetical protein -
  C3K23_RS09050 (C3K23_09170) rcrQ 1939415..1941331 (-) 1917 WP_164180529.1 ABC transporter ATP-binding protein Regulator
  C3K23_RS09055 (C3K23_09175) rcrP 1941331..1943064 (-) 1734 WP_023419575.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38758.32 Da        Isoelectric Point: 10.0479

>NTDB_id=227247 C3K23_RS09040 WP_164180527.1 1938020..1939093(+) (rpoS) [Streptomyces sp. 604F]
MQTRPPRPAPAAPPSALAPDVPTPRRSPQRAPAGGAGTGPQGAGGRAPAGPDQAGAAAPDLFRQYLREIGRIPLLSAADE
VELARRVEAGVFAAAKLAAGCADAGLARDLRRLVVLGEQAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRA
VEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRALLQEAGREPAAEEVGERLGLSAEKVE
EVLRLAREPISLHAPVGGEDDVFLGDLIEDADAASPAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEE
IGRLFGVTRERVRQIESKTLRRLREHTAAGQLRGYLE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=227247 C3K23_RS09040 WP_164180527.1 1938020..1939093(+) (rpoS) [Streptomyces sp. 604F]
GTGCAGACCAGGCCCCCTCGCCCCGCGCCCGCCGCCCCGCCCTCGGCCCTCGCCCCGGACGTCCCCACTCCGCGCAGGTC
GCCCCAGCGGGCCCCGGCCGGCGGAGCCGGGACCGGGCCGCAGGGCGCGGGCGGGCGGGCACCGGCAGGACCCGACCAGG
CGGGGGCGGCCGCCCCCGACCTCTTCCGGCAGTACCTCCGGGAGATCGGGCGCATCCCGCTGCTCTCGGCCGCCGACGAG
GTGGAGCTGGCCCGGCGCGTGGAGGCCGGTGTGTTCGCCGCGGCGAAGCTCGCCGCGGGCTGCGCGGACGCGGGGCTCGC
CCGGGACCTGCGGCGGCTGGTGGTGCTCGGGGAACAGGCCAAGGGGCGGCTCATCGAGGCCAATCTGCGGCTCGTCGTCT
CGGTCGCCAAGCGGTACACGGGACGCGGCCTGACCATGCTCGACCTGGTGCAGGAGGGCAACCTCGGGCTGATCCGCGCG
GTGGAGAAGTTCGACTACACCCGGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATACGCCAGGCGATGTCCCGCGC
CCTCGCCGACCAGGCCCGCACCATCCGGGTGCCGGTGCACGTGGTGGAGCTGATCAACCGGGTCGTGCGCACCCAGCGCG
CCCTGCTCCAGGAGGCGGGGCGTGAGCCGGCCGCCGAGGAGGTCGGCGAGCGGCTCGGGCTGAGCGCCGAGAAGGTCGAG
GAGGTGCTGCGGCTGGCCCGCGAACCCATCTCCCTGCACGCGCCGGTCGGCGGTGAGGACGACGTCTTCCTCGGCGACCT
CATCGAGGACGCCGACGCGGCCTCCCCCGCCGAGAGCGCCGCCCTGCTCCTGCTCCGCCAGCACCTCGACGCGGTCCTCG
CCACCCTCGGCGACCGCGAACGCCAGGTGGTGCAGTTGCGGTACGGGTTCGACGACGGGCGGCCGCGCACCCTGGAGGAG
ATCGGCCGGCTCTTCGGGGTCACCCGCGAACGGGTCCGCCAGATCGAGTCGAAGACGCTGCGCCGGCTCCGTGAGCACAC
GGCGGCGGGGCAGTTGCGCGGCTACCTGGAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(203-279)

Sigma-70 region 2 (Sigma70_r2)

(124-193)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(60-93)

Sigma-70, region 4 (Sigma70_r4)

(292-345)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.863

81.793

0.367