Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C3K23_RS09050 Genome accession   NZ_CP026490
Coordinates   1939415..1941331 (-) Length   638 a.a.
NCBI ID   WP_164180529.1    Uniprot ID   -
Organism   Streptomyces sp. 604F     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934415..1946331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K23_RS09030 (C3K23_09150) - 1934525..1935787 (+) 1263 WP_023422842.1 NAD(P)/FAD-dependent oxidoreductase -
  C3K23_RS09035 (C3K23_09155) dnaG 1935908..1937812 (+) 1905 WP_033948508.1 DNA primase -
  C3K23_RS09040 (C3K23_09160) rpoS 1938020..1939093 (+) 1074 WP_164180527.1 RNA polymerase sigma factor Regulator
  C3K23_RS09045 (C3K23_09165) - 1939110..1939325 (-) 216 WP_033948506.1 hypothetical protein -
  C3K23_RS09050 (C3K23_09170) rcrQ 1939415..1941331 (-) 1917 WP_164180529.1 ABC transporter ATP-binding protein Regulator
  C3K23_RS09055 (C3K23_09175) rcrP 1941331..1943064 (-) 1734 WP_023419575.1 ABC transporter ATP-binding protein Regulator
  C3K23_RS09060 (C3K23_09180) - 1943196..1944650 (-) 1455 WP_023419574.1 FGGY-family carbohydrate kinase -
  C3K23_RS09065 (C3K23_09185) - 1944741..1945040 (-) 300 WP_033948503.1 hypothetical protein -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 68788.78 Da        Isoelectric Point: 4.8128

>NTDB_id=227248 C3K23_RS09050 WP_164180529.1 1939415..1941331(-) (rcrQ) [Streptomyces sp. 604F]
MAGPMGAGAPGQQSMDFKGSGRRLLAQFRPEKNVLWAMLATGLVSVALSVTGPKILGWATDLVFAGIVGRDMPAGATREQ
VLAGMREGGDDGVADMLSGMDFTPGQGIDFGAVGEVLLLALGVFLLASALMAVSARLSNRAINRTVFRMRRDVQTKLSRL
PLSYFDQRQRGEVLSRATNDIDNIGQTLQQTMGQVVNSLLTVIGVLVMMFWISPLLALVALVTVPLSFVVATRVGKRSQP
HFVSQWSSTGTLNAHIEEMYTGHSLVKVFGRQEESAERFAEENDALCQASFKAQFTSGIMQPLMMLVSNFNYVLVAVVGG
LRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDADEQEPDPVPGARLEKPRGRVALEQVSF
RYEPDRPLIEDLSLTVEPGRTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVEIAAMAREDLRSRIGMVLQDTWLFG
GTIAENIAYGASREVSREEVEEAARAAHADRFVRTLPDGYDTVLDDEGSGVSAGEKQLVTIARAFLSDPVILVLDEATSS
VDTRTEVLIQQAMARLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHTELLAAEGAYARLYAAQFAEAVVEVD

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=227248 C3K23_RS09050 WP_164180529.1 1939415..1941331(-) (rcrQ) [Streptomyces sp. 604F]
ATGGCGGGCCCGATGGGCGCCGGAGCGCCGGGACAGCAGTCGATGGACTTCAAGGGCTCGGGCAGGCGGCTGCTGGCCCA
GTTCCGCCCCGAGAAGAACGTGCTGTGGGCGATGCTCGCCACCGGCCTGGTCAGCGTGGCGCTCTCGGTGACCGGCCCGA
AGATCCTCGGCTGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGCCGCGACATGCCGGCCGGCGCCACCCGTGAGCAG
GTGCTGGCGGGGATGCGCGAGGGCGGCGACGACGGCGTGGCCGACATGCTCTCCGGGATGGACTTCACCCCCGGCCAGGG
CATCGACTTCGGCGCCGTCGGCGAGGTGCTGCTGCTCGCGCTCGGCGTCTTCCTGCTGGCAAGCGCCCTGATGGCGGTCT
CGGCCCGGCTCTCGAACCGCGCGATCAACCGCACCGTCTTCCGGATGCGCCGCGACGTGCAGACCAAGCTGTCGCGGCTG
CCGCTCTCCTACTTCGACCAGCGCCAGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGACAACATCGGCCAGAC
GCTTCAGCAGACGATGGGCCAAGTGGTCAACTCGCTGCTGACCGTCATCGGTGTGCTGGTGATGATGTTCTGGATATCGC
CGCTGCTCGCCCTGGTGGCGCTGGTGACGGTGCCGCTCTCCTTCGTGGTCGCCACCCGGGTCGGCAAGCGTTCCCAGCCG
CACTTCGTCAGCCAGTGGTCCTCGACGGGCACGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACAGCCTGGTCAA
GGTCTTCGGCCGCCAGGAGGAGTCGGCCGAGCGGTTCGCCGAGGAGAACGACGCGCTCTGCCAGGCGTCTTTCAAGGCCC
AGTTCACCAGCGGCATCATGCAGCCGCTGATGATGCTCGTCTCCAACTTCAACTACGTGCTGGTCGCCGTCGTCGGTGGC
CTCCGGGTCGCCTCGGGCGCCCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTCGATGCCGCT
GACCCAGGTCGCCTCGATGGCCAACCTGGTGCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCG
ACGAGCAGGAGCCCGACCCGGTCCCCGGCGCCCGCCTGGAGAAGCCGCGCGGCCGCGTCGCCCTGGAGCAGGTCTCCTTC
CGCTACGAGCCGGACCGGCCCCTGATCGAGGACCTCTCCCTGACCGTCGAGCCGGGCCGCACGGTCGCCATCGTCGGCCC
GACCGGCGCCGGCAAGACCACCCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCACCGGCGGCCGGATCACCCTGGACG
GCGTCGAGATCGCCGCCATGGCCCGGGAGGACCTGCGTTCCCGGATCGGCATGGTCCTCCAGGACACCTGGCTGTTCGGC
GGCACCATCGCGGAGAACATCGCCTACGGCGCCTCCCGCGAGGTGAGCCGTGAGGAGGTCGAGGAGGCGGCCCGCGCCGC
CCACGCCGACCGCTTCGTCCGCACGCTCCCCGACGGCTACGACACCGTCCTCGACGACGAGGGCAGCGGTGTCAGCGCCG
GCGAGAAGCAGCTCGTCACCATCGCGCGGGCCTTCCTCTCCGACCCGGTGATCCTCGTCCTGGACGAGGCCACCAGCTCG
GTGGACACCCGTACCGAGGTGCTGATCCAGCAGGCCATGGCCCGCCTCGCGCACGGCCGGACCTCGTTCGTCATCGCCCA
CCGCCTCTCCACGATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGGGCCATCGTCGAGCAGGGCTCGCACACCG
AACTGCTCGCCGCCGAGGGGGCGTACGCCCGCCTGTACGCGGCCCAGTTCGCCGAGGCGGTCGTCGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(410-559)

ABC transporter transmembrane region (ABC_membrane)

(111-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.79

85.737

0.384

Multiple sequence alignment