Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MARSALSMR5_RS16610 Genome accession   NZ_CP020931
Coordinates   3628387..3629775 (+) Length   462 a.a.
NCBI ID   WP_075195691.1    Uniprot ID   A0A1W6KD95
Organism   Marinobacter salarius strain SMR5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3623387..3634775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MARSALSMR5_RS16595 (MARSALSMR5_03373) - 3624068..3624904 (+) 837 WP_041336829.1 outer membrane protein assembly factor BamD -
  MARSALSMR5_RS16600 (MARSALSMR5_03374) - 3624949..3626601 (-) 1653 WP_085681588.1 NAD+ synthase -
  MARSALSMR5_RS16605 (MARSALSMR5_03375) - 3626687..3628333 (+) 1647 WP_075195692.1 PAS domain-containing sensor histidine kinase -
  MARSALSMR5_RS16610 (MARSALSMR5_03376) pilR 3628387..3629775 (+) 1389 WP_075195691.1 sigma-54 dependent transcriptional regulator Regulator
  MARSALSMR5_RS16615 (MARSALSMR5_03377) - 3629897..3630469 (+) 573 WP_198324868.1 GspH/FimT family pseudopilin -
  MARSALSMR5_RS16620 (MARSALSMR5_03378) - 3630626..3631111 (+) 486 WP_083637211.1 GspH/FimT family pseudopilin -
  MARSALSMR5_RS16625 (MARSALSMR5_03379) pilV 3631120..3631602 (+) 483 WP_052479560.1 type IV pilus modification protein PilV -
  MARSALSMR5_RS16630 (MARSALSMR5_03380) - 3631605..3632732 (+) 1128 WP_075195688.1 PilW family protein -
  MARSALSMR5_RS16635 (MARSALSMR5_03381) - 3632732..3633247 (+) 516 WP_075195687.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50879.96 Da        Isoelectric Point: 4.7542

>NTDB_id=227248 MARSALSMR5_RS16610 WP_075195691.1 3628387..3629775(+) (pilR) [Marinobacter salarius strain SMR5]
MTTHTALIVDDEPDIRDLLEITLSRMGITTLTAPDITCAKKLLGEHKPQLCLTDMNLPDGNGIELVQWIQQNTPCTPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALRLSEAEANTQDTDDEPGLLLGKSTEIQKLRSQTRKLARSQA
PVFISGESGSGKELVARMIHLQGPRRDGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPDLVQEGIFRQDLFYRINVIELAVPPLRERPDDISLLA
RHILERIGKEYECEPASLTQGAIGRLKQYDFPGNVRELENVLERAFTLCDADQIDAGDLHLGNGVQTASSPTQVIAEGEA
NDDETAPVPDGEIDLENYLENIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=227248 MARSALSMR5_RS16610 WP_075195691.1 3628387..3629775(+) (pilR) [Marinobacter salarius strain SMR5]
ATGACCACTCATACCGCCCTGATCGTAGACGACGAACCCGATATCCGGGACCTTCTGGAAATCACACTCAGCCGTATGGG
AATAACAACCCTGACCGCGCCAGACATCACCTGCGCGAAGAAGCTTCTGGGTGAACACAAACCACAACTCTGCCTGACAG
ACATGAACCTGCCCGATGGCAACGGCATCGAGCTTGTGCAGTGGATACAGCAGAATACGCCCTGTACCCCTGTGGCTGTA
ATCACGGCCTACGGCAACATGGATACGGCCATTGAATCCCTGAAGGCCGGTGCCTTCGATTTTGTGTCCAAGCCGGTTGA
GCTTCCGCGGCTTCGGGAGTTGGTCAACAGTGCTCTCCGGTTGTCGGAGGCCGAAGCCAACACTCAGGACACTGACGATG
AACCGGGTCTGTTACTCGGCAAATCAACAGAAATTCAAAAACTCCGAAGCCAAACTCGGAAACTGGCCAGAAGCCAAGCA
CCCGTTTTCATCAGCGGGGAATCGGGTAGCGGTAAAGAACTGGTCGCAAGAATGATTCATTTGCAGGGTCCTCGCCGCGA
CGGTCCCTTTATAGCTGTCAACTGTGGAGCCATCCCCTCTGAACTGATGGAGAGTGAATTTTTTGGGCACAAAAAGGGCA
GCTTTACCGGGGCCGTTGAAAACAAAGACGGCCTGTTTCGATCTGCCAACGGTGGCACTTTGTTTCTGGACGAAGTTGCT
GACCTGCCTCTGGCAATGCAGGTAAAACTCCTGAGGGCAATTCAGGAAAAGGCTGTCCGCCCGGTTGGCGATACCAAGGA
AGTTCCGGTGGATATCCGGGTACTCAGCGCGACCCATAAGAACCTTCCAGATCTGGTTCAGGAAGGCATTTTTCGGCAAG
ACCTTTTCTACCGGATCAACGTCATTGAACTGGCTGTGCCTCCTCTGCGGGAACGACCAGACGACATTTCCTTGCTTGCT
CGCCACATTCTCGAAAGAATCGGTAAAGAATATGAATGCGAACCCGCCTCGCTAACCCAGGGCGCCATCGGGCGGCTCAA
ACAGTACGATTTCCCGGGCAACGTAAGGGAACTCGAAAATGTTCTGGAGCGCGCCTTTACGCTTTGCGATGCCGATCAAA
TTGATGCCGGCGATCTGCACCTGGGAAATGGTGTACAGACGGCGTCGTCCCCCACCCAGGTTATCGCGGAAGGCGAGGCC
AACGATGACGAGACTGCCCCGGTGCCCGATGGCGAGATTGACCTGGAAAACTACCTGGAGAACATAGAGAGACAAGCCAT
CGAGAAGGCTCTGGAAGCCACCCGATGGAATAAAACGGCGGCCGCTAAGCGTCTGGGAATCAGCTTTCGAGCGCTTCGGT
ACCGCCTCAAGAAGCTGGGAATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(138-304)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6KD95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

100

0.63
  pilR Acinetobacter baumannii strain A118

53.913

99.567

0.537

Multiple sequence alignment