Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   YKEC1_RS02260 Genome accession   NZ_CP026473
Coordinates   453182..453814 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain KBN10P04869     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 448182..458814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YKEC1_RS02235 (YKEC1_0413) yhfG 448314..448481 (+) 168 WP_000736860.1 YhfG family protein -
  YKEC1_RS02240 (YKEC1_0414) fic 448471..449073 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  YKEC1_RS02245 (YKEC1_0415) pabA 449105..449668 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  YKEC1_RS02250 (YKEC1_0416) argD 449754..450974 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  YKEC1_RS02255 (YKEC1_0417) yhfK 451041..453131 (-) 2091 WP_001356225.1 YccS/YhfK family putative transporter -
  YKEC1_RS02260 (YKEC1_0418) crp 453182..453814 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  YKEC1_RS02270 (YKEC1_0419) yhfA 454116..454520 (+) 405 WP_001148908.1 OsmC family protein -
  YKEC1_RS02275 (YKEC1_0420) prkB 454575..455444 (-) 870 WP_001274680.1 phosphoribulokinase -
  YKEC1_RS02280 (YKEC1_0421) yheU 455498..455716 (-) 219 WP_000907085.1 YheU family protein -
  YKEC1_RS02285 (YKEC1_0422) yheT 455710..456732 (-) 1023 WP_000057380.1 hydrolase -
  YKEC1_RS02290 (YKEC1_0423) yheS 456732..458645 (-) 1914 WP_000634789.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=227162 YKEC1_RS02260 WP_000242755.1 453182..453814(-) (crp) [Escherichia coli strain KBN10P04869]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=227162 YKEC1_RS02260 WP_000242755.1 453182..453814(-) (crp) [Escherichia coli strain KBN10P04869]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467