Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   B9K09_RS18315 Genome accession   NZ_CP020892
Coordinates   3961453..3962790 (+) Length   445 a.a.
NCBI ID   WP_087518168.1    Uniprot ID   -
Organism   Pseudomonas sp. M30-35     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3956453..3967790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9K09_RS18290 (B9K09_18280) pgeF 3956556..3957293 (-) 738 WP_087518163.1 peptidoglycan editing factor PgeF -
  B9K09_RS18295 (B9K09_18285) rluD 3957290..3958264 (-) 975 WP_087518164.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  B9K09_RS18300 (B9K09_18290) - 3958416..3959411 (+) 996 WP_087518165.1 outer membrane protein assembly factor BamD -
  B9K09_RS18305 (B9K09_18295) - 3959629..3959868 (+) 240 WP_087518166.1 PP0621 family protein -
  B9K09_RS18310 (B9K09_18300) pilS 3959858..3961456 (+) 1599 WP_087518167.1 nitrogen regulation protein NR(II) Regulator
  B9K09_RS18315 (B9K09_18305) pilR 3961453..3962790 (+) 1338 WP_087518168.1 sigma-54 dependent transcriptional regulator Regulator
  B9K09_RS18320 (B9K09_18310) - 3962847..3963821 (-) 975 WP_087516234.1 IS110 family transposase -
  B9K09_RS18325 (B9K09_18315) thiO 3964176..3965261 (-) 1086 WP_087518169.1 glycine oxidase ThiO -
  B9K09_RS18330 (B9K09_18320) - 3965315..3965833 (+) 519 WP_087518170.1 GspH/FimT family pseudopilin -
  B9K09_RS18335 (B9K09_18325) - 3965939..3966457 (+) 519 WP_087519157.1 GspH/FimT family pseudopilin -
  B9K09_RS18340 (B9K09_18330) pilV 3966444..3967019 (+) 576 WP_087518171.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49620.88 Da        Isoelectric Point: 5.8168

>NTDB_id=226942 B9K09_RS18315 WP_087518168.1 3961453..3962790(+) (pilR) [Pseudomonas sp. M30-35]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRCARNVKEAREWLAKEPFDLCLTDMRLPDGTGMDLVQYISQRHPQMPVAM
ITAYGSLDTAINALKSGAFDFLTKPVDLGRLRELVATALRIQAADGKEVPVDSRLLGDSPPMRTLRKQIHKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LAMQVKLLRAIQEKAVRTVGGQHEVVVDVRILCATHKDLGAEVAAERFRQDLFYRLNVIELRVPALRERREDIAELADVM
LKRLSNGGGATAATLQPDALEKLKSYRFPGNVRELENMLERAYTLCEDDQITAADLRLADAGTSSEQGEASLAQIDNLED
YLENIERKLIVQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=226942 B9K09_RS18315 WP_087518168.1 3961453..3962790(+) (pilR) [Pseudomonas sp. M30-35]
ATGACCCGCCAGAGAGCCCTGATCGTCGACGATGAACCGGATATCCGTGAACTTCTTGAGATAACTCTGGGCAGGATGAA
GCTCGACACACGTTGCGCCCGCAACGTTAAAGAGGCGCGCGAATGGCTGGCCAAAGAACCCTTTGATTTATGCCTGACCG
ACATGCGGCTACCCGATGGTACGGGTATGGACTTGGTGCAATACATCTCCCAACGCCACCCACAAATGCCAGTGGCGATG
ATTACCGCCTACGGCAGTCTTGATACTGCAATCAATGCACTTAAGTCCGGTGCGTTCGACTTTCTCACCAAGCCAGTCGA
CCTCGGGCGTCTACGTGAACTCGTCGCCACTGCGCTGCGCATTCAGGCTGCCGACGGCAAAGAAGTTCCTGTCGACAGTC
GCCTGCTCGGCGACTCGCCACCCATGCGCACCCTACGCAAGCAGATCCACAAGCTTGCACGCAGCCAGGCCCCGGTTTAC
ATCAGTGGCGAATCCGGCAGCGGTAAAGAACTCGTGGCTCGGCTCATCCACGAACAGGGCCCACGCAGTGAGCAACCTTT
TGTGCCAGTGAACTGCGGCGCAATTCCTTCTGAGCTTATGGAAAGTGAATTCTTCGGCCACAAAAAGGGCAGTTTCACGG
GCGCGGTAGAAGATAAACAAGGGCTGTTTCAAGCGGCCAATGGCGGCACGCTTTTTCTCGACGAGGTGGCAGACTTACCG
TTGGCCATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAGAAAGCTGTGCGCACTGTCGGCGGCCAGCATGAAGTGGTGGT
TGATGTGCGCATACTTTGCGCAACCCACAAAGACCTCGGCGCCGAAGTTGCGGCCGAGCGTTTTCGTCAGGATTTGTTCT
ACCGGCTTAACGTGATCGAACTCCGGGTCCCGGCATTACGCGAACGCCGTGAAGACATCGCGGAACTTGCCGATGTCATG
CTGAAGCGCCTGTCGAATGGTGGCGGAGCAACCGCTGCGACGCTACAACCCGACGCGCTAGAAAAACTTAAAAGCTACCG
TTTTCCCGGCAACGTACGCGAGCTGGAAAACATGCTGGAGCGGGCTTACACGCTCTGCGAAGACGATCAAATTACCGCTG
CAGATCTACGCCTGGCAGATGCCGGCACCTCATCCGAACAAGGTGAAGCCAGCTTGGCGCAAATCGACAATCTGGAAGAC
TACCTGGAAAACATCGAGCGCAAACTCATCGTTCAAGCCTTGGAAGAAACCCGCTGGAATCGCACAGCGGCGGCGCAACG
GCTTGGCTTGAGCTTTCGCTCAATGCGCTATCGACTGAAGAAGCTGGGCATCGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

84.944

100

0.849
  pilR Acinetobacter baumannii strain A118

49.673

100

0.512

Multiple sequence alignment